Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 194 2e-44 seq14 114 2e-20 seq410 93.3 5e-14 >seq1 Length=33571687 Score = 194 bits (214), Expect = 2e-44 Identities = 318/456 (70%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || || || ||||||||||||| | |||||||||||||| |||||||| || | Sbjct 24628368 TCAAATTCCTCTCCCCAAACATCAGGTAATCCAGGACATTCATGTGGACACATTAAACTC 24628427 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63111 |||| | ||| || |||| ||||| || | || || ||||| | ||| ||| || Sbjct 24628428 CACTTTGTGTCCTCAAGAACTCTCTTCATGAACAAGTCCGGGATCCATAAAGC-ATAGAA 24628486 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 || ||||| | ||| | ||| || || ||||| |||||||| |||||||| || | | Sbjct 24628487 AAGGTCTCTCGCTCTGTTTTCTTCTTTACCTGTGTTCTTTTTGAGATCGAGAAATTCGAA 24628546 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 || |||| ||||||||||||||| || ||||| | ||||||| | |||||||| || Sbjct 24628547 GATGTCAGCATGCCACGGTTCCAAATACATGGCAAACGCTCCAGGTCTCTTGTTTCCACC 24628606 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||||| | ||| | || |||||||| || ||||| | ||| |||| | |||||| || Sbjct 24628607 TTGATCGACGTAACGCGCAGTGTTATTGTATACTCTAATCATAGGAACTAAACCATTAGA 24628666 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351 | ||| || || || || || | ||| |||| | ||| | || | ||| Sbjct 24628667 TACACCGTTTGTGCCAGAAATTCGAGTACCAGTGGCTCTTATAGTGTGAACACTCAAACC 24628726 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || || || || ||| || ||| || |||| || | |||||||| || || || Sbjct 24628727 AATGCCACCAGCAGATTTGCTGACTAAAGCACATCTCTTCAGTGTATCATAAATTCCTTC 24628786 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || || |||| |||| || ||||| || Sbjct 24628787 AATACTGTCTTCAGTCATTGTAAGAAGGAAACAACT 24628822 Score = 152 bits (168), Expect = 7e-32 Identities = 270/391 (69%), Gaps = 7/391 (2%) Strand=Plus/Plus Query 61964 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62023 ||||| || | ||| | ||| ||| ||||| |||||||| || | || ||||||||| Sbjct 24627100 GCTATGTGTACATTTAGAGACTGAGACTGATCAATGAAGGCACCTCGATCCGCAGCCATT 24627159 Query 62024 TTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 62083 || | ||| |||||||| | ||| ||||| | ||||| || | | ||| | || || Sbjct 24627160 TTCAAAATGGTCTTTTGCGAAATCTCCCAGACTGTTTTGTACAGTTTCTTCAATTCATCA 24627219 Query 62084 GGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 62140 |||| ||| | ||||||| || || | ||| || || |||||| ||||| Sbjct 24627220 GGAATCCTTGCAACGTTCTGAACCGAACCGTTGTTTGCGATTATTTCATTCTTCATCTCC 24627279 Query 62141 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 62200 || | ||| | | || || || || || | | | ||| ||||| || || || ||| Sbjct 24627280 TCGTCCCACAGATCCCTGTCTGTCAAGTCTTTCAACAAATGAGGATTGACGACCTGGAAT 24627339 Query 62201 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 62260 |||||||| | || | || |||||||| || || || || || || | || || || Sbjct 24627340 TCTCCAGAAAGAACACGCCTGGTGTAAATGTTGCTTGTGTAGGGCTCTATCGATTCGTTG 24627399 Query 62261 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62320 || ||||||||||| || || || || || ||||| || || | || ||| ||| | | Sbjct 24627400 TTGCCCAAAATTTGTGCGGTCGAAGCTGTTGGCATTGGCGCAAGTAACAAAGAATTGCGA 24627459 Query 62321 AGACCGTATGTTCTG--ATTTTATCTTTTAG 62349 | ||| |||||||| |||||| |||| || Sbjct 24627460 ACACC--ATGTTCTGCAATTTTAGCTTTCAG 24627488 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 63812 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 63871 || |||| ||| || ||||||||||||| ||| ||||| |||||||| || ||||||||| Sbjct 24629345 CTGAATACTTTCTTGGTTTCTTTGTGTAAATTGGATACTGCTATTCTGGCTGCTAGAATG 24629404 Query 63872 GCATAATCCG 63881 |||||||||| Sbjct 24629405 GCATAATCCG 24629414 >seq14 Length=421909 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188 || || || ||||||| ||| | ||||||| |||||| | | | | ||| |||||| Sbjct 277594 TTTTTCATTTCATCATCCCAAAGATTTCTCTTTGTTAAATCATTTAATAAATGTGGATTA 277535 Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248 || | |||||||| ||||| || | | ||||||||||||||| || || || ||| Sbjct 277534 ACAATAATGAATTCTCCTGACAAAACACGTCTAGTGTAAATATTACTTGTGTAAGGCTCC 277475 Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62301 || || ||||| |||||||| || ||||| || || || || ||||| ||||| Sbjct 277474 ACTGATTCATTGTTTCCCAATATCTGAGCTGTAGAAGCTGTTGGCATTGGTGC 277422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/296 (67%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62698 ||||||| ||| | ||| |||||||||| | ||| | ||| ||| || || || Sbjct 276917 GGATAATGATTCAGATCAATAATTTTATCTAAATTCTTAGCAACAGTTTTAACAACTTCT 276858 Query 62699 TTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACATGTTCAATGCAACA 62752 |||| ||| ||||||| | | || | |||||||| || | |||| Sbjct 276857 TTCAATTTTAGAAAATTGTAGTACTGTGTTTCAACATCAACAAACATATTAACAGCAATG 276798 Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 ||||| | |||||| || ||||| || || | | | |||||||| || |||||||| Sbjct 276797 GATGCTAAATTACACACTGCTACTTCGTTTGGAGAAGAGTATTGTATAATTTCAGTGCAT 276738 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 | |||||| | || || ||||| | |||||||||||| || || || ||| Sbjct 276737 AAATTACTGCTTTTAATAGTTCCAAGATTTTGTTGATTTGATTTACGATTGCAGTGATCT 276678 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 62928 ||||| || || | ||||| |||||||||| || | || || ||| || |||| Sbjct 276677 TTATAGAGCATATAAGGAGTTCCAGTTTCAACTTGTGCTTTTAAAATGGCAGTCCA 276622 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/313 (67%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 63144 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63203 |||| ||||| | ||| ||||| | | |||||| | |||||| || || | || | | Sbjct 276223 TATTTTTTTTTAAATCAAGGAATTCAAAAATATCTGCATGCCAGGGCTCTAGATAAAGAG 276164 Query 63204 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63263 | | | ||||||| ||||||||| || ||||| || | | | || || || | | Sbjct 276163 CAAATGCACCAGGCCTTTTGTTTCCACCTTGATCAATAAAGCGTACTGTATTGTTGAATA 276104 Query 63264 CTCTCAACATTGGAA-TAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC--TTC 63320 |||| | ||| || | |||| | ||| | | ||||| | | || || || ||| Sbjct 276103 CTCTGATCATAGGTACTAATCCATTTGCAAAT-CCATTATTGCT--AGCAATCGCAGTTC 276047 Query 63321 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63380 | | || | ||||||| || || ||| || || ||||| ||| || | || Sbjct 276046 CTTTAGCTCTAATATTATGAACACTTATACCAATACCACCTGCGGATTTGCTAATAATTG 275987 Query 63381 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 63440 | |||| ||||| || || | || || ||||||||||| || |||||| |||| | || Sbjct 275986 CACATCTCTTTAATGTTTCGAAAATTCCTTCTATACTATCTTCAATCATGGTAAGAATAA 275927 Query 63441 AACAGCTAGACAT 63453 |||| ||| |||| Sbjct 275926 AACAACTAAACAT 275914 Score = 86.0 bits (94), Expect = 8e-12 Identities = 198/292 (68%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 63443 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGAGT 63501 || || |||||||| || | |||| | ||| ||| ||| |||||||| || || || Sbjct 275836 CACCTGGACATTTGTTGGTGTATAGTACATGCAAAAAAAAAGTGTAGGAGATGCATGTGT 275777 Query 63502 AAACCATTTTTCAGAAAGTAGA-TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63560 || | ||||||| ||| | || || ||||| || || || | |||| || || Sbjct 275776 GAAGTAACGTTCAGAA-GTATAATTATATGTCTCTATGACTTTTTCAAGATCCTCTTTAT 275718 Query 63561 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63620 ||| ||||||| || | ||| | ||| | || |||| ||||| | ||||| ||| Sbjct 275717 GAAGAGCTACTGCAACTCTCATAAGCATATCTTGTGGTCGCTCAACCA-CTTGTCCATTA 275659 Query 63621 TTT-TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63679 | | || ||||| ||| ||||| |||||||| ||||||||||| | ||| ||| Sbjct 275658 ATCCTGAATAAGTAACTTTTCTCCAAGGTTTTAAATCCAAAATAGTTAAAGACAAAATCT 275599 Query 63680 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 63731 | || || || | || || ||| |||| |||| ||| | || || || Sbjct 275598 CTGTCATAGTCTATGGCAGAATTTAGTCTATCTTTATGTTTTTGAATTATAT 275547 >seq410 Length=4553683 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 || || ||||| | ||| |||||||| || ||||||||||||||||||| || || Sbjct 2615951 TAGGTGTCAATGAGAAGGGAGTACATTTCAGAGTGAATGTTTTCAATGGCCACCTGGAAG 2615892 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 || |||||||| | |||||| || | ||| ||||| | || || || | | ||| Sbjct 2615891 CCATAGAAGCAGCGAGCCTCAGTCACCTGCACTTCCTGGCTGAAACGCTCAACCAGATTC 2615832 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33094 ||||| || || || || ||| ||||| || ||||| ||||| Sbjct 2615831 TCATTGACAATACCATCCGAGGCAGCAAAGAATGCCAAAACATG 2615788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633583701400800