Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq335 114 1e-20 seq410 109 6e-19 seq414 107 2e-18 seq1 105 7e-18 >seq335 Length=1594555 Score = 114 bits (126), Expect = 1e-20 Identities = 73/77 (95%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 924472 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 924413 Query 126327 GTTCGAACCCCACACCT 126343 ||||||||||||||||| Sbjct 924412 GTTCGAACCCCACACCT 924396 >seq410 Length=4553683 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || ||||| || |||||||| || ||||||||||| ||||| |||||||||||||| | | Sbjct 2615649 TTGGAAAGGTCTACTTCTTCTACTGTCCAAAACGAAGCTTCGGCTTTTTTGTACATGTGC 2615590 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || ||||| | |||| |||||||| | ||||| | |||||| || || || | Sbjct 2615589 CAAATGTCGGGCCATTGGATTGGAAACAATACAAATCTTCCAGGGTTTTCCTTGAGAAGT 2615530 Query 93701 GGCTCTAGTTGTGGGTCAAA 93720 ||||| | |||||| ||||| Sbjct 2615529 GGCTCCAATTGTGGATCAAA 2615510 Score = 104 bits (114), Expect = 3e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || | || || ||||||||||| || | || || || || | ||| Sbjct 2615954 ATGTAGGTGTCAATGAGAAGGGAGTACATTTCAGAGTGAATGTTTTCAATGGCCACCTGG 2615895 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || ||||| || | ||| || || | ||||||||| || || | ||| || ||| Sbjct 2615894 AAGCCATAGAAGCAGCGAGCCTCAGTCACCTGCACTTCCTGGCTGAAACGCTCAACCAGA 2615835 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || |||||||| |||||||| || || ||||| || ||||| | |||| || || || Sbjct 2615834 TTCTCATTGACAATACCATCCGAGGCAGCAAAGAATGCCAAAACATGCGAGATGAAGTGC 2615775 Query 93542 TTCTCAT 93548 |||||| Sbjct 2615774 CTCTCAT 2615768 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||| | || || | ||||||||||| || | || || | || || || ||||| Sbjct 2616278 TCGTCCCTAGAAATGAGTTCATTGCTGAAGGTAAGTCCAGGCATAAGACCACGCTTCTTC 2616219 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| || || | ||||||||| || ||||| || || || || || || || || Sbjct 2616218 AGCCAGAAAATGGCAGCAAAACTGCCGCTGAAAAAGATTCCCTCGACTGCAGCGAAGGCA 2616159 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 | | ||||||||||| | ||| || |||||||| || | ||||| | || Sbjct 2616158 ATCACTCGTTCGGCAAACGTCGCGCTATCGTGACTGATCCAGTTCAGGGCCCAGTTCGCC 2616099 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 || || | ||| || ||||||||||| ||||| || ||| Sbjct 2616098 TTCTTGGCGACACAGGGAAGTGTTTCGATGGCGTTGAACAGG 2616057 >seq414 Length=4040552 Score = 107 bits (118), Expect = 2e-18 Identities = 75/83 (90%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 3802522 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGTCTGGGAGCGTGG 3802581 Query 126327 GTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||| | |||| Sbjct 3802582 GTTCGAACCCCACACTTAGCAAA 3802604 >seq1 Length=33571687 Score = 105 bits (116), Expect = 7e-18 Identities = 80/92 (87%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCC-GAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGC 126322 || |||||||||| ||| |||||||||||| |||||||| || |||||||| |||||| Sbjct 29101192 AGCCAGGTTGGCCCGAGCGGTCTAAGGCGCGGGATTTAAGCTCCTGTTCCCTCTGGGAGC 29101251 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||||| |||||||||| |||||| || Sbjct 29101252 GTGGGTTCGAATCCCACACCTGGCAAATTTTT 29101283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556818353285520