Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq202 107 5e-20 seq130 78.8 2e-11 >seq202 Length=693939 Score = 107 bits (118), Expect = 5e-20 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391 |||| ||| ||| |||||||| | | | || || || || |||||||| ||| | | Sbjct 423209 ACCCGATGTCGCGGGTCTTTCCGAAAGTGACCAAGTGCACCTTCCACAAATATGGTGCGT 423150 Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451 | ||| | || | || | ||| || |||||| | |||||| |||| | |||||||||| Sbjct 423149 CCGGCACGGTGCAGAAGTTCGACGGTCTCTGCGTGCTCCCGCTGAACATCGTCAACGAGA 423090 Query 3452 AGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||||| | |||||||||||||||||| Sbjct 423089 AGATCTACGTGTTCCTCTGGTTCTGGTTC 423061 Score = 77.0 bits (84), Expect = 8e-11 Identities = 104/144 (72%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 2677 GTGAAGGGCTTAATAAAGCTTCCAACAGTCTCCATCG---ACAATGTATTCTTCCGGTTG 2733 |||||||||||| | ||||| ||||| | ||||| |||||||| ||| | || Sbjct 425103 GTGAAGGGCTTACTGAAGCTCGATACAGTATGCATCGACAACAATGTA---TTCAGATTA 425047 Query 2734 CATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAG 2793 |||||| | |||| | |||||||| | || || || ||||||| || ||| ||||| Sbjct 425046 CATTACAAAGCCACCTTCATCATCCTTGTGGCCTTCTCGCTGCTGGTCACATCGAGGCAG 424987 Query 2794 TACTTCGGAAAGCTCATAGATTGC 2817 ||| | ||| | | ||| || ||| Sbjct 424986 TACATTGGAGACCCCATCGACTGC 424963 >seq130 Length=816446 Score = 78.8 bits (86), Expect = 2e-11 Identities = 96/131 (73%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||||| ||| | || || | | | || |||| | ||||||||| Sbjct 459437 TGCACCTTCCACAAATTTGGTGCCTCCGGAACGATTCAGAAGCACGACGCCCTCTGCATC 459496 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486 || | |||| | | ||||||||||||||||| |||||||||||||||||| ||| Sbjct 459497 CTGGCTCTGAACATCCTTAACGAGAAGATCTACATCTTCCTCTGGTTCTGGTTCATCGTA 459556 Query 3487 CTAGCCATCAT 3497 || ||| |||| Sbjct 459557 CTGGCCGTCAT 459567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479167623000