Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_008993.1 Length=5530 Score E Sequences producing significant alignments: (Bits) Value seq1380 136 1e-28 seq1359 136 1e-28 seq414 129 2e-26 seq343 118 4e-23 >seq1380 Length=11128 Score = 136 bits (150), Expect = 1e-28 Identities = 168/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| ||||||||| ||| || || |||| ||||||||||| ||||||| || || Sbjct 1658 TTTTGTGCCCTCCAGTTGGATTGCTTAAAGTTTCTGGCCGCTGCGCGAAACGAACTTACC 1717 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAG 4055 | ||||||| ||||| | | | || || | |||| |||| || | | ||||| |||| Sbjct 1718 GCTTTCCGGCACCGTCGAGCAAACAAGTAATATACACACCT-GGGCTGTAAAAAACAAAG 1776 Query 4056 CCTCAGACCACATGTTTGTTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTTACA 4115 ||||||| ||||||||| || ||| || ||| ||| | Sbjct 1777 CCTCAGATCACATGTTTATT---------GACCTCAGCTTTGACTCGACCGACAATTAAA 1827 Query 4116 TGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAATATACTATTCTT 4170 ||||||||||| | ||| ||||||| |||||||||||||||||| |||||||||| Sbjct 1828 TGTGATCTGAGGCATTTCTTATTTTACTGGCCTACGTATGTAATCTACTATTCTT 1882 >seq1359 Length=145664 Score = 136 bits (150), Expect = 1e-28 Identities = 168/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| ||||||||| ||| || || |||| ||||||||||| ||||||| || || Sbjct 140249 TTTTGTGCCCTCCAGTTGGATTGCTTAAAGTTTCTGGCCGCTGCGCGAAACGAACTTACC 140190 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAG 4055 | ||||||| ||||| | | | || || | |||| |||| || | | ||||| |||| Sbjct 140189 GCTTTCCGGCACCGTCGAGCAAACAAGTAATATACACACCT-GGGCTGTAAAAAACAAAG 140131 Query 4056 CCTCAGACCACATGTTTGTTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTTACA 4115 ||||||| ||||||||| || ||| || ||| ||| | Sbjct 140130 CCTCAGATCACATGTTTATT---------GACCTCAGCTTTGACTCGACCGACAATTAAA 140080 Query 4116 TGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAATATACTATTCTT 4170 ||||||||||| | ||| ||||||| |||||||||||||||||| |||||||||| Sbjct 140079 TGTGATCTGAGGCATTTCTTATTTTACTGGCCTACGTATGTAATCTACTATTCTT 140025 >seq414 Length=4040552 Score = 129 bits (142), Expect = 2e-26 Identities = 155/216 (72%), Gaps = 22/216 (10%) Strand=Plus/Plus Query 3951 CCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGT 4010 |||||||||| |||||||| |||||||||| ||||||||||||| | ||||||| ||| Sbjct 105797 CCGGAAAGCGCCAACTTTCTGGCCGCTGCGTGAAACGAAGTTGCCGCTTTCCGGCACCGT 105856 Query 4011 CGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACATGT 4070 || | ||||||| || ||| |||| |||||| ||||| |||| |||||| || ||| Sbjct 105857 CGAGGAGAAAAACAGGATACGCACCTGGGCCAGTAAAAAAGAAAGGCTCAGATCATCTGT 105916 Query 4071 TTGTTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTTACATGTGATCTGAGACTT 4130 || || ||| || ||| ||||| ||| |||||||| | Sbjct 105917 TTATT--------------------GACTTCGACCGACAATTACACGTGTTCTGAGACAT 105956 Query 4131 TTGTTATTTTTCTGGCC--TACGTATGTAATATACT 4164 || ||||||| |||| | || ||||||||| |||| Sbjct 105957 TTATTATTTTACTGGTCTATAGGTATGTAATCTACT 105992 >seq343 Length=328406 Score = 118 bits (130), Expect = 4e-23 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 3938 TTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCAC 3997 || |||||||| |||||||||| ||| ||| ||||||||||| ||||||||||||| | Sbjct 62896 TTATGCCCTCCGGCCGGAAAGCGCAAACATTCCGGCCGCTGCGCGAAACGAAGTTGCCGC 62837 Query 3998 ATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCC 4057 ||||| | || || | |||| | ||| |||| ||| ||||||||||| |||||| Sbjct 62836 CTTCCGTCACCGCCGAGCAGAACAGCAGTATACACGCCTGAGCCAGAAAAAAAGAAAGCC 62777 Query 4058 TCAGACCACATGTTT 4072 ||||| |||||| || Sbjct 62776 TCAGATCACATGATT 62762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17582827202150