Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq335 100 2e-16 seq158 91.5 1e-13 >seq335 Length=1594555 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || |||||||| |||||| ||| || ||||||||||| |||| Sbjct 906501 CCTCCTCTCAGACGAAGTACCAGATGGAGCGTGGACTCTTTTTGAATGTTGTAGTCTG-A 906443 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | || |||| || || |||||||| || || |||||||| || || Sbjct 906442 AAGGGTCCTTCCATCCTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGTGG 906383 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || || || ||| |||||| ||| | | | | | || | || |||| Sbjct 906382 GATGCCTTCCTTATCCTGAATTTTAGCCTTGACGTTTTCGATAGTGTCGGAAGCTTCGAC 906323 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | ||||| ||||| || |||| ||||| ||||| || |||||| Sbjct 906322 TTCTAAGGTTATGGTTTTACCAGTTAAGGTTTTGACAAAAATCTGCATT 906274 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || || || || |||||||| || |||||||||||||||||| || | Sbjct 906273 CCACCTCGAAGACGGAGAACGAGATGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAG-A 906215 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| ||| |||| || ||||| || || ||||| || || |||||||| || || Sbjct 906214 AAGTGTACGCCCGTCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGAGG 906155 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | | ||||||||| |||||| Sbjct 906154 AATTCCTTCTTTGTCCTGAATTTT 906131 >seq158 Length=288468 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| ||| ||||| ||||||||||| || | |||| || Sbjct 89866 AGTCGAAGTACAAGGTGAAGTGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTGCGT 89807 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| || ||||| ||||| | ||||||||| || | | ||| Sbjct 89806 CCATCTTCGAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGATCTGGAGGAATACCTTCT 89747 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCGT 34088 ||||| |||||| ||| | |||| | |||||| || |||| ||| | || Sbjct 89746 TTGTCTTGAATTTTAGCCTTGA-CATTCTCAATCGTATCAGAAGCTTCGACTTCCAGAGT 89688 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||||| || || || || || ||||| |||||||| Sbjct 89687 AATTGTTTTGCCAGTAAGCGTCTTAACAAAAATTTGCAT 89649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397032890570596