Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 129 9e-25 seq410 87.8 3e-12 >seq1 Length=33571687 Score = 129 bits (142), Expect = 9e-25 Identities = 290/419 (69%), Gaps = 14/419 (3%) Strand=Plus/Plus Query 203916 GCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG--GGGTCGGCCATGTGAAT 203973 |||| ||||| | |||||| || | || || || ||||| || | || ||||| | Sbjct 24627053 GCCAGCCGTAGAAGTGCATCGACGTGAGCTTT-TC-CGTTGTTGGCTGAGCTATGTGTAC 24627110 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 || |||||||| || || ||||| ||| || ||||| || ||||| || | ||||| Sbjct 24627111 ATTTAGAGACTGAGACTGATCAATGAA-GGCACCTCGATCCGCAGCCATTTTCAAAATGG 24627169 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT-TGAGGCACATCT 204091 |||| |||||||||||||| || || ||| ||| || ||| | | ||| | || Sbjct 24627170 TCTTTTGCGAAATCTCCCAGACTGTTTTGTACA-GTTTCTTCAATTCATCAGGAATC-CT 24627227 Query 204092 TCCCACGTCCTGATC-GAGCCGTTGTCGGCCATCAGTCTCATCCT-CGTCTCCTCCCCCC 204149 | | |||| |||| | || ||||||| || || | | |||| || | ||||||| ||| Sbjct 24627228 TGCAACGTTCTGAACCGAACCGTTGTTTGCGATTATT-TCATTCTTCATCTCCTCGTCCC 24627286 Query 204150 ACATG-CCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCG 204208 ||| ||| ||| ||| || || || || || |||| || ||| || ||||| Sbjct 24627287 ACAGATCCCTGTCTG-TCAAGTCTTTCAACAAATGAGGATTGACGACCTGGAATTCTCCA 24627345 Query 204209 GACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCG 204268 || || || | | |||| | | |||| | ||| | || || | || ||||||||||| Sbjct 24627346 GAAAGAACACGCCTGGTGTAAATGTTGCTTGTGTAGGGCTCTATCGATTCGTTGTTGCCC 24627405 Query 204269 AAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACC 204327 ||||| || ||||| || || ||||| || || || | || || ||||| ||||| Sbjct 24627406 AAAATTTGTGCGGTCGAAGCTGTTGGCATTGGCGCAAGTAACAAAGAATTGCGAACACC 24627464 >seq410 Length=4553683 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 160214 GAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCC 160273 ||||||||||| | ||| | ||||| ||||||| ||| ||| ||||| | ||| Sbjct 2615933 GAGTACATTTCAGAGTGAATGTTTTCAATGGCCACCTGGAAGCCATAGAAGCAGCGAGCC 2615874 Query 160274 TCCAGATA-CTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTC 160332 | ||| | |||||| ||||| |||| | | | ||||||| |||| || | || || Sbjct 2615873 T-CAGTCACCTGCACTTCCTGGCTGAAACGCTCAACCAGATTCTCATTGACAATACCATC 2615815 Query 160333 GGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTC 160377 | ||| |||||||| ||||| || || |||||||| || ||||| Sbjct 2615814 CGAGGCAGCAAAGAATGCCAAAACATGCGAGATGAAGTGCCTCTC 2615770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795094589294880