Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq158 100 2e-16 seq335 95.1 8e-15 >seq158 Length=288468 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || |||||||| || | ||| ||||| || || || ||||||| |||| || || Sbjct 90319 CGAAGTACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCGGACAAAGTTCGCCCA 90260 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||| || || |||| ||||||||||||||||| | ||| | ||||| ||| Sbjct 90259 TCCTCGAGTTGCTTTCCAGCAAAGATTAAACGCTGCTGATCTGGGGGAATACCTTCCTTG 90200 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || || | | | | |||||| | | ||| || || | ||||| Sbjct 90199 TCTTGGATCTTAGCCTTTACGTTTTCAATTGTGTCGGAGGCTTCAACTTCAAGGGTAATG 90140 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || ||||| ||||||||||| ||||| Sbjct 90139 GTCTTACCAGTCAAAGTCTTTACGAAGATTTGCAT 90105 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | || ||||||| ||| | ||| ||||| || ||||| || |||| | Sbjct 91699 CCGCCACGAAGTCGTAGTACCAGATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGAC 91640 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| || | || || || | ||||| ||||||||||| |||| ||| Sbjct 91639 AGAGTACGACCATCTTCGAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCCGGGGGA 91580 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| || || || | || | | ||||| | | ||| || Sbjct 91579 ATACCTTCCTTGTCTTGGATCTTAGCCTTTACGTTCTCGATGGTGTCAGAGGCTTCAACT 91520 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||| || ||||| || | ||| ||||||||||| |||||| Sbjct 91519 TCGAGGGTAATAGTCTTACCAGTCAGAGTCTTTACGAAGATTTGCATG 91472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || |||||||| || | ||| ||||| || ||||| || |||| || | || || Sbjct 90775 CGAAGTACCAAGTGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAGAGTACGACCA 90716 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | || || || | ||||| ||||||||||| |||| ||| | ||||| ||| Sbjct 90715 TCTTCGAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCCGGGGGAATACCTTCCTTG 90656 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || || | || | | ||||| | | ||| || || | ||||| Sbjct 90655 TCTTGGATCTTAGCCTTTACGTTCTCGATGGTGTCAGAGGCTTCAACTTCGAGGGTAATA 90596 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| || | ||| ||||||||||| |||||| Sbjct 90595 GTCTTACCAGTCAGAGTCTTTACGAAGATTTGCATG 90560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || |||||||| || | ||| ||||| || ||||| || |||| || | || || Sbjct 91231 CGAAGTACCAAGTGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGACAGAGTACGACCA 91172 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | || || || | ||||| ||||||||||| |||| ||| | ||||| ||| Sbjct 91171 TCTTCGAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCCGGGGGAATACCTTCCTTG 91112 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || || | || | | ||||| | | ||| || || | ||||| Sbjct 91111 TCTTGGATCTTAGCCTTTACGTTCTCGATGGTGTCAGAGGCTTCAACTTCGAGGGTAATA 91052 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| || | ||| ||||||||||| |||||| Sbjct 91051 GTCTTACCAGTCAGAGTCTTTACGAAGATTTGCATG 91016 >seq335 Length=1594555 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | |||||| ||||| || | ||| || || || ||||| || || | Sbjct 905129 CCTCCTCTTAGACGCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATATTGTAGTCAGAA 905070 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| || |||||||| || |||| || | |||||||||||| | || Sbjct 905069 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGA 905010 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| ||||| ||| | | | | ||||||| | ||||| Sbjct 905009 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATGGTGTCTGAGGCCTCCACT 904950 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || ||||| || || || ||||| || ||||||||||| Sbjct 904949 TCCAGAGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 904903 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||| | ||| || || | ||| | ||| ||||||||| ||||| ||||| | Sbjct 905814 GCCTCCTCGAAGACGAAGAACAAGATGGAGAGTTGATTCTTTTTGGATATTGTAATCTGA 905755 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | |||| |||| ||| || || | ||||| | |||||| ||||| | || Sbjct 905754 TAGTGTTCTTCCATCTTCCAGTTGCTTTCCTGCGAAAATCAGACGCTGTTGATCTGGTGG 905695 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||||||||| ||||| ||||| | | | || |||| ||| || Sbjct 905694 GATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGGTATCTGATGCTTCAAC 905635 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| ||| || |||||||| || | ||| ||||| || || |||||| Sbjct 905634 CTCCAGAGTGATGGTTTTACCAGTCAGAGTCTTTACAAAAATTTGCATG 905586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347343783708434