Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 174 2e-38 seq14 131 2e-25 seq410 84.2 2e-11 >seq1 Length=33571687 Score = 174 bits (192), Expect = 2e-38 Identities = 319/465 (69%), Gaps = 2/465 (0%) Strand=Plus/Plus Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| || |||||||| || || | |||| | ||| ||||||||||||| |||||| Sbjct 24628359 TATAATTTATCAAATTCCTCTCCCCAAACATCAGGTAATCCAGGACATTCATGTGGACAC 24628418 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 || || ||| | || | ||||| |||| || | || || ||||| | | Sbjct 24628419 ATTAAACTCCACTTTGTGTCCTCAAGAACTCTCTTCATGAACAAGTCCGGGATCCATAAA 24628478 Query 48237 GCTATAAATAAA-TCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 || ||| | || || || | ||| |||||| || || | ||| |||| || || || Sbjct 24628479 GC-ATAGAAAAGGTCTCTCGCTCTGTTTTCTTCTTTACCTGTGTTCTTTTTGAGATCGAG 24628537 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 ||| || | || ||||||||||| ||||| ||||| || || | | || |||| || Sbjct 24628538 AAATTCGAAGATGTCAGCATGCCACGGTTCCAAATACATGGCAAACGCTCCAGGTCTCTT 24628597 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 || || |||||||| | || | ||||| || || || ||||| | ||| || || | Sbjct 24628598 GTTTCCACCTTGATCGACGTAACGCGCAGTGTTATTGTATACTCTAATCATAGGAACTAA 24628657 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 |||||| |||| ||| || || || ||||| | | ||| | ||||||||| | || Sbjct 24628658 ACCATTAGATACACCGTTTGTGCCAGAAATTCGAGTACCAGTGGCTCTTATAGTGTGAAC 24628717 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 | ||| || ||||| || ||| | || |||||| | || || |||||||| Sbjct 24628718 ACTCAAACCAATGCCACCAGCAGATTTGCTGACTAAAGCACATCTCTTCAGTGTATCATA 24628777 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||||||||| ||||| || || |||| | | || |||||||| Sbjct 24628778 AATTCCTTCAATACTGTCTTCAGTCATTGTAAGAAGGAAACAACT 24628822 Score = 127 bits (140), Expect = 2e-24 Identities = 239/348 (69%), Gaps = 5/348 (1%) Strand=Plus/Plus Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 || || | ||| ||||| ||| ||||||||| || ||||||| ||| || ||||| | Sbjct 24627103 ATGTGTACATTTAGAGACTGAGACTGATCAATGAAGGCACCTCGATCCGCAGCCATTTTC 24627162 Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAA-TTTGTTTAATGTCTTCTGG 47218 ||||| | |||| | |||||||| |||||||| || | ||| || ||| || || || Sbjct 24627163 AAAATGGTCTTTTGCGAAATCTCCCAGACTGTTTTGTACAGTTTCTTCAAT-TCATCAGG 24627221 Query 47219 GAGATTAGTA---TTTTGAATAGATCCTCCgttttctataattttgttttttaattcatt 47275 | | | | || |||| || || |||| | || |||| || || | || | Sbjct 24627222 AATCCTTGCAACGTTCTGAACCGAACCGTTGTTTGCGATTATTTCATTCTTCATCTCCTC 24627281 Query 47276 tgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTC 47335 ||| || | | || || || ||| || | ||||||||| || | || ||||| Sbjct 24627282 GTCCCACAGATCCCTGTCTGTCAAGTCTTTCAACAAATGAGGATTGACGACCTGGAATTC 24627341 Query 47336 TCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATT 47395 |||||| || || | | | | || || || ||||| || || ||||| ||||| || || Sbjct 24627342 TCCAGAAAGAACACGCCTGGTGTAAATGTTGCTTGTGTAGGGCTCTATCGATTCGTTGTT 24627401 Query 47396 TCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAA 47443 || |||||||| || || || ||||| ||||| | |||| ||| || Sbjct 24627402 GCCCAAAATTTGTGCGGTCGAAGCTGTTGGCATTGGCGCAAGTAACAA 24627449 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| |||||| || |||||||||| ||| || || ||||| || | |||| || | Sbjct 24628033 ACAAACATATTAACGGCAATAGATGCTAAATTGCACACGGCTACTTCGTCTGGAGAAGAA 24628092 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT- 47983 || || | | ||| | |||| ||||| | | |||||||||| | ||||| ||||| Sbjct 24628093 TACTGCACAACTTCCGTGCATAAATTACTGCTTCTGATAGTACCAAGGTTTTGTTGATTG 24628152 Query 47984 -ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 ||| | |||| || ||||| | ||| |||| ||||||||||| | |||| Sbjct 24628153 GATTTGCGAT--TACAGTGATCTTTGTATAACATGTAAGGGGTTCCAGTTTCAACTTGAG 24628210 Query 48043 A 48043 | Sbjct 24628211 A 24628211 >seq14 Length=421909 Score = 131 bits (144), Expect = 2e-25 Identities = 219/317 (69%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || ||| |||| |||| | ||||| || || | ||||| |||||||| || |||| | Sbjct 276230 TTACCAATATTTTTTTTTAAATCAAGGAATTCAAAAATATCTGCATGCCAGGGCTCTAGA 276171 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 || | || | | |||| || | ||| || || |||||||| ||| | | | |||||| Sbjct 276170 TAAAGAGCAAATGCACCAGGCCTTTTGTTTCCACCTTGATCAATAAAGCGTACTGTATTG 276111 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 || | ||||| | ||| || || | ||||||| | ||||| | | | ||| | Sbjct 276110 TTGAATACTCTGATCATAGGTACTAATCCATTTGCAAATCCATTATTGCTAGCAATCGCA 276051 Query 48450 CTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATT 48509 |||| ||||||| |||||| || ||||| ||||||||||| ||| || Sbjct 276050 GTTCCTTTAGCTCTAATATTATGAACACTTATACCAATACCACCTGCGGATTTGCTAATA 275991 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 | ||||| | || | || || ||||||||||||||||||| || ||||| | | Sbjct 275990 ATTGCACATCTCTTTAATGTTTCGAAAATTCCTTCTATACTATCTTCAATCATGGTAAGA 275931 Query 48570 AGAAAACAACTAGACAT 48586 | |||||||||| |||| Sbjct 275930 ATAAAACAACTAAACAT 275914 Score = 107 bits (118), Expect = 2e-18 Identities = 128/173 (74%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 ||||||| |||||| || || ||||||| |||||| || ||||| || |||||| || Sbjct 276819 AACAAACATATTAACAGCAATGGATGCTAAATTACACACTGCTACTTCGTTTGGAGAAGA 276760 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 |||||||| ||||||| |||| ||||| | ||| ||||| || | |||||| ||||| Sbjct 276759 GTATTGTATAATTTCAGTGCATAAATTACTGCTTTTAATAGTTCCAAGATTTTGTTGATT 276700 Query 47984 --ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTC 48034 ||| | | || || || || |||||| |||| ||||||||||| Sbjct 276699 TGATTTACGAT--TGCAGTGATCTTTATAGAGCATATAAGGAGTTCCAGTTTC 276649 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 47232 TGAATAGATCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgt 47291 |||||||| || ||| | || |||| |||||| | ||||| |||||| |||| Sbjct 277624 TGAATAGAACCATTGTTGGCAATTATTTCGTTTTTCATTTCATCATCCCAAAGATTTCTC 277565 Query 47292 tcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTA 47351 | ||||| ||||| | ||| ||||||||||| |||||||| || | || | Sbjct 277564 TTTGTTAAATCATTTAATAAATGTGGATTAACAATAATGAATTCTCCTGACAAAAC---A 277508 Query 47352 CGGCTA---TATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGA 47408 || ||| || ||||||||||| || || || | |||||||| ||||| || || ||| Sbjct 277507 CGTCTAGTGTAAATATTACTTGTGTAAGGCTCCACTGATTCATTGTTTCCCAATATCTGA 277448 Query 47409 GCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTT 47464 || || || ||||| ||||| | ||||| | || ||| | |||||||| || Sbjct 277447 GCTGTAGAAGCTGTTGGCATTGGTGCAAGAAGTAGTGAATTACGAACTCCATACTT 277392 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||| |||||||| ||| | ||| | |||| | | ||||||| || Sbjct 277885 TCCAGCCATAAAAATGCATGGAAGTAAGTTTTTCAGTTGTAGGCTTAGCCATATGAACAT 277826 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| || |||||||| || |||| ||| || ||||| | |||||||| Sbjct 277825 TTACAGATTGTGATTGGTCAATAAAAGCGCCTCGATCTGCAGCCATTTTTAAAATAATTT 277766 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTT 47214 | || ||||||||||||||||||||||| | || ||| | |||| Sbjct 277765 TCTGAGGTATCTCCCATACTGTTTTATATAATTCTTTCAAATCTT 277721 >seq410 Length=4553683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 19459 TCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCA 19518 ||||||||||| ||||||||||| ||||| || |||||||| ||||||| ||| || || Sbjct 2615640 TCTACTTCTTCTACTGTCCAAAACGAAGCTTCGGCTTTTTTGTACATGTGCCAAATGTCG 2615581 Query 19519 CGATATTGTATAGGAAATATAACAAATCT 19547 | |||| || ||||| | |||||||| Sbjct 2615580 GGCCATTGGATTGGAAACAATACAAATCT 2615552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562065953256720