Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq158 140 3e-27 seq335 131 1e-24 seq236 116 3e-20 seq59 104 2e-16 seq138 102 7e-16 >seq158 Length=288468 Score = 140 bits (154), Expect = 3e-27 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || || |||||||| ||||| || ||| || ||| ||||| |||| | || | | Sbjct 89866 AGTCGAAGTACAAGGTGAAGTGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTGCGT 89807 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| ||||| || || |||||||| || || |||||||| |||||||| |||||| Sbjct 89806 CCATCTTCGAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGATCTGGAGGAATACCTTCT 89747 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 || ||||||||||| || || |||||| ||||||| | || ||| ||||| Sbjct 89746 TTGTCTTGAATTTTAGCCTTGACATTCTCAATCGTATCAGAAGCTTCGAC-TTCCAGAGT 89688 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| |||||||| || ||||| ||||||||||| Sbjct 89687 AATTGTTTTGCCAGTAAGCGTCTTAACAAAAATTTGCAT 89649 Score = 95.1 bits (104), Expect = 1e-13 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| || || |||||||||||| |||||| |||||| || || | ||||| Sbjct 89413 CTAAGACGAAGAACCAGATGAAGGGTAGATTCTTTTTGAATATTATAGTCGGACAGAGTA 89354 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | ||| || || || || || || || || | || ||||| || || ||||| ||| Sbjct 89353 CGTCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCT 89294 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC---AGTGTGAGTACATTCG 563430 ||||||||||| || || || || ||| || || || || | | || ||| Sbjct 89293 TCTTTATCTTGGATCTTGGCCTTGACATTCTCGATAGTGTCGGAAGCCTCA--AC-CTCG 89237 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || ||||| |||||||| ||||| Sbjct 89236 AGGGTGATGGTCTTCCCAGTCAGGGTTTTCACGAAAATCTGCAT 89193 >seq335 Length=1594555 Score = 131 bits (144), Expect = 1e-24 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || |||||||| || || |||||| ||||||||||| | ||| |||||| Sbjct 905804 AGACGAAGAACAAGATGGAGAGTTGATTCTTTTTGGATATTGTAATCTGATAGTGTTCTT 905745 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| ||||| ||||| || ||||| || | || ||||| || || || |||||| Sbjct 905744 CCATCTTCCAGTTGCTTTCCTGCGAAAATCAGACGCTGTTGATCTGGTGGGATACCTTCT 905685 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 || ||||| ||||| ||| || ||||| ||||| | || | | || ||||| Sbjct 905684 TTGTCTTGGATTTTGGCTTTAACATTTTCAATGGTATCTG-ATGCTTCAACCTCCAGAGT 905626 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||||||||| ||||| || || ||||||||||| Sbjct 905625 GATGGTTTTACCAGTCAGAGTCTTTACAAAAATTTGCAT 905587 Score = 120 bits (132), Expect = 2e-21 Identities = 161/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || |||||||| || || || ||| ||||| |||| || || | Sbjct 906264 AGACGGAGAACGAGATGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGTGTACGC 906205 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| | |||||| || ||||| ||||| | ||||| || ||||||||||||||| Sbjct 906204 CCGTCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGGTCTGGAGGAATTCCTTCT 906145 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGT 563435 || || |||||||| ||| || ||||| || || | | ||| ||| ||||| Sbjct 906144 TTGTCCTGAATTTTGGCTTTAACATTTTCAATGGTGTCGGAGGCCTCTAC-TTCCAGAGT 906086 Query 563436 AACAGTTTTACCAGTAAGAG-TTTTAACGAAAATTTGCAT 563474 || || |||||||| |||| |||| |||||||||||||| Sbjct 906085 AATGGTCTTACCAGTCAGAGTTTTTGACGAAAATTTGCAT 906046 Score = 113 bits (124), Expect = 4e-19 Identities = 162/222 (73%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTG-GTAATATTGTAATCAGCTAGAGTTCT 563315 ||||| || |||||||| || || |||||| | || |||||||||| || ||| Sbjct 906035 AGACGAAGAACAAGATGGAGTGTTGATTCTTTTTGGGATGTTGTAATCAGACAGGGTTTC 905976 Query 563316 TGA-ATC-TTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || ||| ||| |||||||| || ||||| || || | ||| || |||||||| || ||| Sbjct 905975 TGCCATCCTTCCAGTTGTTTACCAGCAAATATGAGACGTTGTTGGTCAGGAGGGATGCCT 905916 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGT-GTGAGTACATTCGAG 563432 ||||| |||||||| || ||| || || || ||||||| | ||| ||| | Sbjct 905915 TCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAAGCCTCTAC-TTCCAA 905857 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || || ||||| | |||||| || ||||||||||| Sbjct 905856 AGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAAATTTGCAT 905815 Score = 105 bits (116), Expect = 5e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| || || | ||||| || || || ||||||||| |||| ||||| Sbjct 905123 CTTAGACGCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATATTGTAGTCAGAAAGAGTA 905064 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | |||||| | |||||| || ||||| ||||| | |||||||| ||||||||||| Sbjct 905063 CGTCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCC 905004 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 ||||| || || ||||| ||| || ||||| || || | | | | || ||| || Sbjct 905003 TCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATGGTGTCTGAG-GCCTCCACTTCCAG 904945 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | ||||| ||||| | ||||| || || || ||||| Sbjct 904944 AGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 904903 Score = 100 bits (110), Expect = 2e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || ||||| |||||||| || || |||||| ||| |||||||||| ||||||||| Sbjct 905576 AGTCGGAGAACAAGATGGAGCGTTGATTCTTTCTGAATGTTGTAATCAGAAAGAGTTCTT 905517 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||||| || || || |||||||| || | ||||| || ||||| || || ||| Sbjct 905516 CCGTCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGAGGGATACCCTCT 905457 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 || || || ||||| || || ||||||||||| Sbjct 905456 TTGTCCTGGATTTTGGCCTTGACATTTTCAATTGTATC 905419 >seq236 Length=27037145 Score = 116 bits (128), Expect = 3e-20 Identities = 125/163 (77%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 930666 GATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCATT 930725 |||||||| || ||| |||| |||||||||||| |||| |||||| | ||||||||| Sbjct 26037672 GATTTTTCCAGTCCTAATGTTGCAAAAGAAATGCATGTTGGTCATTTGAGGTCTACCATT 26037613 Query 930726 ATTGGAGAATCTTTATGTA-GATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCAA 930784 |||||||| | | || | | |||| |||| | || | | |||| | | |||| Sbjct 26037612 ATTGGAGACAGTAT-TGCACGTTTATTGGAATTCTTAGGTCATGATGTTCTTAGGATCAA 26037554 Query 930785 TCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCT 930827 ||| ||||| |||||||||||||||||||| ||| |||||||| Sbjct 26037553 TCACATTGGAGATTGGGGAACACAATTTGGAATGCTAATTGCT 26037511 >seq59 Length=290097 Score = 104 bits (114), Expect = 2e-16 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAG-AAGTTACGGATGC 550401 ||| | |||||||||||| |||| | | | | || ||| || | |||| |||| Sbjct 188469 GTTCTTATGAAAATGAAAGAAACTG-CTGAGGGTTATTTGAGCACGCCCGTTAAAAATGC 188411 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 || || || || ||||| || || || ||||| || | || || ||||| ||||| || Sbjct 188410 CGTTATCACCGTCCCAGCTTACTTCAACGACTCTCAGAGGCAGGCCACTAAGGATGCCGG 188351 Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 || ||||||||| | || |||||| | | || || |||||||| || ||||| ||||| Sbjct 188350 ACAAATTGCTGGATTAAACGTTCTTAGAGTAATAAACGAACCTACAGCAGCTGCTCTTGC 188291 Query 550522 ATATGGACTTGATAAA 550537 |||||| | |||||| Sbjct 188290 CTATGGAATGGATAAA 188275 >seq138 Length=30297376 Score = 102 bits (112), Expect = 7e-16 Identities = 257/387 (66%), Gaps = 8/387 (2%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 ||||| || ||||| || ||||| || || ||| | |||||||||||||| |||| | Sbjct 836906 AATCCCGACGAGGCAGTCGCCTACGGCGCAGCAGTGCAAGCAGCTATTCTGACTGGCGAG 836847 Query 552270 ACTG--ATGA----AAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 || | || || || ||| | || | || ||||| ||| | ||||| || || Sbjct 836846 GGTGGCAAGAACTCAACCCTCCAAGACGTTCTGCTGGTAGACGTTGCACCTCTGTCCCTC 836787 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 || | || || | ||||| | ||||| || | ||||| | || | ||||| Sbjct 836786 GGCATCGAGACCGCCGGAGGAGTCATGACCAACATCATCGAGCGCAACGCCCGAATTCCA 836727 Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443 || ||| | || | || ||||||| || || || ||| | |||||||| || ||| Sbjct 836726 TGCAAACAGTCGCAGACCTTCACTACGTACTCGGACAACCAACCGGCTGTTACCATCCAA 836667 Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT-ACTTTTAATTT 552502 | | || || || || | ||||| || || || || |||||| ||| || | Sbjct 836666 GTGTACGAGGGTGAGCGAGCCCTGACTAAGGACAACAACCATCTTGGTCGCTTCGAACTC 836607 Query 552503 AGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGA 552562 || ||||| | || || || ||||| || || | || || || || ||||| || || Sbjct 836606 AG-CGGTATCGCACCGGCGCCCCGTGGCGTGCCAAAGATCGATGTCACCTTCGACATGGA 836548 Query 552563 TGCCAATGGAATTTTGAATGTGACTGC 552589 ||||||||| || || | || ||||| Sbjct 836547 TGCCAATGGTATCCTGCACGTCACTGC 836521 Score = 87.8 bits (96), Expect = 1e-11 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTT-ACGGATGCAGTAATAAC 550410 |||||||| |||||||| || ||| |||| | ||||| | | || || || | || Sbjct 854769 AAAATGAAGGAAACAGCCGAAGCGTTT-TTGGGCCAGAAGGTGAAAGACGCGGTTGTCAC 854827 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || || || || ||||| ||||| || ||||| || || |||||||||||| || || Sbjct 854828 AGTGCCCGCGTACTTTAACGACTCGCAGCGTCAGGCCACCAAAGATGCTGGAGCGATCGC 854887 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || || || ||||| | || ||||| || || || || || || || || || || || Sbjct 854888 CGGTCTCAACGTTCTCAGGATCATCAACGAGCCGACAGCCGCGGCGCTCGCCTACGGTCT 854947 Query 550531 TGATAAACAT 550540 || ||| || Sbjct 854948 CGACAAAAAT 854957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028973510258020