Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq3176 174 5e-39 >seq3176 Length=1299 Score = 174 bits (192), Expect = 5e-39 Identities = 560/863 (65%), Gaps = 16/863 (2%) Strand=Plus/Minus Query 18004 AGTTATGACTACGACAGTTAATTCAGACATGATCATCTACAACCAACTGGCTCAAACAGC 18063 ||| ||| ||||||| |||| || | | || || ||| | | || ||||| || Sbjct 1249 AGTAATGGCTACGACGACTAATAATGATTTAGTAATTTATAACGATTTAGCACAAACTGC 1190 Query 18064 CTATTTAGAACGATTACAAGACAATTTGAATGTTTTTAATGAAGCTTCCAATGGTGCGAT 18123 | ||||||||| ||||| ||||| || |||||| | || || || || || || Sbjct 1189 GTTTTTAGAACGCCGTCAAGATAATTTAGCCGTATTTAATCAGGCATCAAACGGCGCAAT 1130 Query 18124 TATTTATCGTAATGAAATCATTCAAGGTGACTTCAATAAAAATGCATTCTACAAAGTTGG 18183 | | ||| | ||| | || |||||| ||| |||||| || | | || Sbjct 1129 TGTGCTGGATAACCTTTTTATTGAGGGGGACTTCCGTAAGCGTGCATTTTATCAGATCGG 1070 Query 18184 TGGTAGCATTAAACATCGCGATGTGAACTCCAATGCAAAAGTAACTCCGGAAAAAATCGG 18243 ||| ||| | ||||| ||||| ||||||| ||| ||| |||||||||| Sbjct 1069 CGGTTCGATTGAGCATCGTGATGTAAACTCCACAGCATCTGTAGAGAACAAAAAAATCGG 1010 Query 18244 TGCAGGTGAGTCTGTAGGTGTAAAAATTCCATATAAATATGGTCCTTATGCATCAACTGA 18303 || || || ||||| | ||||||| || | |||||||||||||||||| | || || Sbjct 1009 CGCGGGCGAATCTGTTGATGTAAAAGCACCTTGGAAATATGGTCCTTATGCAACGACAGA 950 Query 18304 AGAGGCATTTAAGCGCCGTGCTCGTACACCAGAAGAATTTGCTATGGTTGTTGGTTACGA 18363 ||| |||||||| ||||||| ||| | || || || | | || ||| ||| Sbjct 949 AGAAGCATTTAAACGCCGTGGCCGTGATGTATCGGAGTTCTCTGAGTTAGTGGGTACCGA 890 Query 18364 TCTTGCAGATGCATTGGTTGCAGGCCGAT-TAGAGTACAGTTTAGCTTCTTTAAAAGCTG 18422 | |||||||| | | | ||| || | | ||| ||||||| ||||| || | Sbjct 889 TGCGGCAGATGCTTCACTAG-AGGGTTATATCAAATACTCTTTAGCTGCTTTAGGTGCCG 831 Query 18423 CTATTTCTAGTAATCCCGATATGGTTGCGAAAGGAAGTATCGTTGTTGATGGCCGCAAAG 18482 ||||| | ||| || ||||| | || | ||| | |||||| ||| Sbjct 830 CTATTGGCAATAACAAAGAAATGGTGGTGACTGCGGATATTGCGACAGATGGCAAGAAAA 771 Query 18483 CATTAACTCGTGGTATGCGAAAGTTTGGTGATAAGTTTGGCCG----AATTGGCTTATGG 18538 || | || || | || | | |||||||||||| ||| ||| | || Sbjct 770 CACTGACCAAAGGGTTACGCAGATATGGTGATAAGTTCAACCGCGTAAATCTGTTT---- 715 Query 18539 GTGATGAACTCAGATACATATTTCGATATTGTCGATGATGCTATCACTAAGCAAATTTAC 18598 || ||| ||||| || || ||||||||||| ||| | || || ||| || | || Sbjct 714 GTTATGCACTCAACCACCTACTTCGATATTGTTGATCAGGCCATTGATAACAAAGTGTAT 655 Query 18599 GGTGAATCTGAAATCGTTATCTATGGTGGTTTACCAGGAACCTTAGGAAAGCCGGTATTG 18658 | ||| | | | |||||||| ||||| || || || ||||| ||||| ||| || Sbjct 654 GAAGAAGCGGGTGTGGTTATCTACGGTGGACAGCCTGGCACGTTAGGCAAGCCCGTACTG 595 Query 18659 GTGACGGATGCTGTAGGTGATAACGATGC---TTTTGGCTTGCAGTATGGTGCTGTAACA 18715 || || ||| | | | | || ||||| ||||| || | || ||||| | Sbjct 594 GTAACAGATACAGCACCAG-TA--GATGCCATCTTTGGTTTAGTGCCGGGGGCTGTGATT 538 Query 18716 GTAACTGAATCACAAGTACCGGGCTTCCGAGCTTATGACATCAATGATGAAGAAAACTTA 18775 | |||||||| |||| || ||||||| ||||||| ||||||||| | || ||||| Sbjct 537 ATCACTGAATCCCAAGAGCCAACCTTCCGATCTTATGAAATCAATGATAAGGAGAACTTG 478 Query 18776 GCAATCGGTATGCGTGCTGAAGGTGCATTTAACCTAGATATTCTTGGTTATAGTTGGGAT 18835 | ||| ||| |||| |||||| | ||||| | | |||| || ||||| |||||| Sbjct 477 GAAATTGGTTATCGTGGTGAAGGCGTGGTTAACGTTGGCGTTCTCGGCTATAGCTGGGAT 418 Query 18836 ACATCGAAAGGTGAAAATCCTGA 18858 ||| ||||| |||| ||||| Sbjct 417 GAATCAAAAGGCAAAAACCCTGA 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145032696877976