Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28]
6,098 sequences; 295,780,872 total letters
Query= NC_019541.1
Length=45364
Score E
Sequences producing significant alignments: (Bits) Value
seq3176 174 5e-39
>seq3176
Length=1299
Score = 174 bits (192), Expect = 5e-39
Identities = 560/863 (65%), Gaps = 16/863 (2%)
Strand=Plus/Minus
Query 18004 AGTTATGACTACGACAGTTAATTCAGACATGATCATCTACAACCAACTGGCTCAAACAGC 18063
||| ||| ||||||| |||| || | | || || ||| | | || ||||| ||
Sbjct 1249 AGTAATGGCTACGACGACTAATAATGATTTAGTAATTTATAACGATTTAGCACAAACTGC 1190
Query 18064 CTATTTAGAACGATTACAAGACAATTTGAATGTTTTTAATGAAGCTTCCAATGGTGCGAT 18123
| ||||||||| ||||| ||||| || |||||| | || || || || || ||
Sbjct 1189 GTTTTTAGAACGCCGTCAAGATAATTTAGCCGTATTTAATCAGGCATCAAACGGCGCAAT 1130
Query 18124 TATTTATCGTAATGAAATCATTCAAGGTGACTTCAATAAAAATGCATTCTACAAAGTTGG 18183
| | ||| | ||| | || |||||| ||| |||||| || | | ||
Sbjct 1129 TGTGCTGGATAACCTTTTTATTGAGGGGGACTTCCGTAAGCGTGCATTTTATCAGATCGG 1070
Query 18184 TGGTAGCATTAAACATCGCGATGTGAACTCCAATGCAAAAGTAACTCCGGAAAAAATCGG 18243
||| ||| | ||||| ||||| ||||||| ||| ||| ||||||||||
Sbjct 1069 CGGTTCGATTGAGCATCGTGATGTAAACTCCACAGCATCTGTAGAGAACAAAAAAATCGG 1010
Query 18244 TGCAGGTGAGTCTGTAGGTGTAAAAATTCCATATAAATATGGTCCTTATGCATCAACTGA 18303
|| || || ||||| | ||||||| || | |||||||||||||||||| | || ||
Sbjct 1009 CGCGGGCGAATCTGTTGATGTAAAAGCACCTTGGAAATATGGTCCTTATGCAACGACAGA 950
Query 18304 AGAGGCATTTAAGCGCCGTGCTCGTACACCAGAAGAATTTGCTATGGTTGTTGGTTACGA 18363
||| |||||||| ||||||| ||| | || || || | | || ||| |||
Sbjct 949 AGAAGCATTTAAACGCCGTGGCCGTGATGTATCGGAGTTCTCTGAGTTAGTGGGTACCGA 890
Query 18364 TCTTGCAGATGCATTGGTTGCAGGCCGAT-TAGAGTACAGTTTAGCTTCTTTAAAAGCTG 18422
| |||||||| | | | ||| || | | ||| ||||||| ||||| || |
Sbjct 889 TGCGGCAGATGCTTCACTAG-AGGGTTATATCAAATACTCTTTAGCTGCTTTAGGTGCCG 831
Query 18423 CTATTTCTAGTAATCCCGATATGGTTGCGAAAGGAAGTATCGTTGTTGATGGCCGCAAAG 18482
||||| | ||| || ||||| | || | ||| | |||||| |||
Sbjct 830 CTATTGGCAATAACAAAGAAATGGTGGTGACTGCGGATATTGCGACAGATGGCAAGAAAA 771
Query 18483 CATTAACTCGTGGTATGCGAAAGTTTGGTGATAAGTTTGGCCG----AATTGGCTTATGG 18538
|| | || || | || | | |||||||||||| ||| ||| | ||
Sbjct 770 CACTGACCAAAGGGTTACGCAGATATGGTGATAAGTTCAACCGCGTAAATCTGTTT---- 715
Query 18539 GTGATGAACTCAGATACATATTTCGATATTGTCGATGATGCTATCACTAAGCAAATTTAC 18598
|| ||| ||||| || || ||||||||||| ||| | || || ||| || | ||
Sbjct 714 GTTATGCACTCAACCACCTACTTCGATATTGTTGATCAGGCCATTGATAACAAAGTGTAT 655
Query 18599 GGTGAATCTGAAATCGTTATCTATGGTGGTTTACCAGGAACCTTAGGAAAGCCGGTATTG 18658
| ||| | | | |||||||| ||||| || || || ||||| ||||| ||| ||
Sbjct 654 GAAGAAGCGGGTGTGGTTATCTACGGTGGACAGCCTGGCACGTTAGGCAAGCCCGTACTG 595
Query 18659 GTGACGGATGCTGTAGGTGATAACGATGC---TTTTGGCTTGCAGTATGGTGCTGTAACA 18715
|| || ||| | | | | || ||||| ||||| || | || ||||| |
Sbjct 594 GTAACAGATACAGCACCAG-TA--GATGCCATCTTTGGTTTAGTGCCGGGGGCTGTGATT 538
Query 18716 GTAACTGAATCACAAGTACCGGGCTTCCGAGCTTATGACATCAATGATGAAGAAAACTTA 18775
| |||||||| |||| || ||||||| ||||||| ||||||||| | || |||||
Sbjct 537 ATCACTGAATCCCAAGAGCCAACCTTCCGATCTTATGAAATCAATGATAAGGAGAACTTG 478
Query 18776 GCAATCGGTATGCGTGCTGAAGGTGCATTTAACCTAGATATTCTTGGTTATAGTTGGGAT 18835
| ||| ||| |||| |||||| | ||||| | | |||| || ||||| ||||||
Sbjct 477 GAAATTGGTTATCGTGGTGAAGGCGTGGTTAACGTTGGCGTTCTCGGCTATAGCTGGGAT 418
Query 18836 ACATCGAAAGGTGAAAATCCTGA 18858
||| ||||| |||| |||||
Sbjct 417 GAATCAAAAGGCAAAAACCCTGA 395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145032696877976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |