Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq158 116 3e-21 seq335 98.7 9e-16 seq1 89.7 5e-13 >seq158 Length=288468 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || || ||||| ||| | ||||| | |||||||| || | Sbjct 90333 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAAACCATCACTTTAGAAGTCGAGGCTTCC 90392 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| || ||| ||||| || ||||| || || || ||| Sbjct 90393 GATACCATCGAAAACGTCAAAGCCAAGATTCAGGATAAGGAAGGTATCCCTCCAGACCAG 90452 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | |||| || || || ||||||||||||| | | | | ||||||||| Sbjct 90453 CAGAGGTTGATTTTCGCTGGAAAGCAACTCGAAGATGGCCGTACTCTGTCCGATTACAAC 90512 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||| ||||| ||||||| || || ||| | || ||||| Sbjct 90513 ATTCAGAAAGAGTCCACTCTTCATTTGGTCTTGAGACTTAGGGGAGG 90559 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || || ||||| ||| | ||||| | |||||||| || | Sbjct 90789 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAAACCATCACTTTAGAAGTCGAGGCTTCC 90848 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| || ||| ||||| || ||||| || || || ||| Sbjct 90849 GATACCATCGAAAACGTCAAAGCCAAGATTCAGGATAAGGAAGGTATCCCTCCAGACCAG 90908 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | |||| || || || ||||||||||||| | | | | ||||||||| Sbjct 90909 CAGAGGTTGATTTTCGCTGGAAAGCAACTCGAAGATGGCCGTACTCTGTCCGATTACAAC 90968 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||| ||||| ||||||| || || ||| | || ||||| Sbjct 90969 ATTCAGAAAGAGTCCACTCTTCATTTGGTCTTGAGACTTAGGGGAGG 91015 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || || ||||| ||| | ||||| | |||||||| || | Sbjct 91245 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAAACCATCACTTTAGAAGTCGAGGCTTCC 91304 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| || ||| ||||| || ||||| || || || ||| Sbjct 91305 GATACCATCGAAAACGTCAAAGCCAAGATTCAGGATAAGGAAGGTATCCCTCCAGACCAG 91364 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | |||| || || || ||||||||||||| | | | | ||||||||| Sbjct 91365 CAGAGGTTGATTTTCGCTGGAAAGCAACTCGAAGATGGCCGTACTCTGTCCGATTACAAC 91424 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||| ||||| ||||||| || || ||| | || ||||| Sbjct 91425 ATTCAGAAAGAGTCCACTCTTCATTTGGTCTTGAGACTTAGGGGAGG 91471 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || || | || || ||| | || || | ||||||||||| Sbjct 89648 CATGCAAATTTTTGTTAAGACGCTTACTGGCAAAACAATTACTCTGGAAGTCGAAGCTTC 89707 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || |||||| || ||||| ||||| || || ||||| Sbjct 89708 TGATACGATTGAGAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCA 89767 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 ||| || || |||| | || || ||||||||||||| | | |||| || ||| Sbjct 89768 GCAGAGGCTGATTTTTGCTGGTAAGCAACTCGAAGATGGACGCACATTGTC--TGACTAC 89825 Query 25352 AATATTCAAAAAGAATCCACCATTCA 25377 || |||||||| |||||||| |||| Sbjct 89826 AACATTCAAAAGGAATCCACACTTCA 89851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || || ||||| || | ||||| | || || || || Sbjct 89420 CATGCAGATCTTTGTTAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTTGAGGCTTC 89479 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| ||| | || || || ||| || |||||||| || || || || || Sbjct 89480 TGACACTATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAGGGCATTCCCCCAGACCA 89539 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | || | || || || || ||||| |||| | | | | ||| ||||| Sbjct 89540 GCAGAGGTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGACGTACTCTGTCCGACTACAA 89599 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||| || |||| || || || | ||||||||||| Sbjct 89600 TATTCAAAAAGAATCTACACTTCACTTGGTCTTGCGTTTGAGAGGAGG 89647 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 |||||||| | || || ||||| | || || || | ||||| |||| || || || Sbjct 89190 AACATGCAGATTTTCGTGAAAACCCTGACTGGGAAGACCATCACCCTCGAGGTTGAGGCT 89249 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||| ||||||||| | || || || || |||||||| || || || || || Sbjct 89250 TCCGACACTATCGAGAATGTCAAGGCCAAGATCCAAGATAAAGAAGGCATTCCCCCAGAC 89309 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 ||||| || | || | || ||||| || ||||| |||| | | | | ||| || Sbjct 89310 CAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGACGTACTCTGTCCGACTAT 89369 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||||| ||| ||||| | || | | | |||||||| Sbjct 89370 AATATTCAAAAAGAATCTACCCTTCATCTGGTTCTTCGTCTTAGAGGAGG 89419 >seq335 Length=1594555 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| |||||||| ||| | ||||| | ||||| ||||| Sbjct 906502 CATGCAGATTTTCGTCAAAACCTTAACCGGTAAAACCATCACCTTAGAAGTTGAAGCTTC 906561 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| |||||||| | || || |||||| ||||| || || || || || || || Sbjct 906562 CGACACTATCGAAAACGTCAAGGCTAAAATTCAGGATAAGGAAGGCATCCCACCAGACCA 906621 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | ||||| | | ||| ||||| || || |||| || | | |||| | ||| Sbjct 906622 GCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAGGATGGAAGGACCCTTTCAG--ACTAC 906679 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || ||||||||||| ||||| ||||| | || || Sbjct 906680 AACATTCAAAAAGAGTCCACGCTTCATCTGGTCTT 906714 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| ||||| || ||| | || || | ||||||||||| | Sbjct 906275 ATGCAGATTTTTGTCAAAACCTTAACTGGTAAAACCATAACCTTAGAAGTCGAAGCTTCC 906334 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || || |||||| ||||| || || || || || || ||| Sbjct 906335 GACACTATCGAAAACGTCAAGGCTAAAATTCAGGATAAGGAAGGCATCCCACCAGACCAG 906394 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || | ||||| | | ||| ||||| || || |||| || | | ||| || |||| Sbjct 906395 CAGCGTCTCATCTTTGCCGGTAAACAGCTGGAGGATGGAAGGACCCTTTCA--GACTACA 906452 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | ||||||||||| ||||| | ||| | || | | |||||||||| Sbjct 906453 ACATTCAAAAAGAGTCCACGCTCCATCTGGTACTTCGTCTGAGAGGAGG 906501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | |||||||| || | || || ||| | ||||| | || || ||||| Sbjct 905586 CATGCAAATTTTTGTAAAGACTCTGACTGGTAAAACCATCACTCTGGAGGTTGAAGCATC 905645 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || ||| ||||| || ||||| ||||| || || ||||| Sbjct 905646 AGATACCATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 905705 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || | || |||| || || || ||||| ||||||| |||| | |||| ||||| Sbjct 905706 ACAGCGTCTGATTTTCGCAGGAAAGCAACTGGAAGATGGAAGAACACTATCAG--ATTAC 905763 Query 25352 AATATTCAAAAAGAATCCAC 25371 ||||| ||||||||||| || Sbjct 905764 AATATCCAAAAAGAATCAAC 905783 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || ||||| | ||||| | || |||||||| Sbjct 905359 ATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTCGAAGCTTCA 905418 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || ||||| || ||||||||||| || || || ||| Sbjct 905419 GATACAATTGAAAATGTCAAGGCCAAAATCCAGGACAAAGAGGGTATCCCTCCAGACCAG 905478 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || |||| | ||||| || || ||||| | |||| | | |||||||| Sbjct 905479 CAGCGTCTGATTTTTGCTGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGATTACAAC 905538 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| |||||||| || Sbjct 905539 ATTCAGAAAGAATCAAC 905555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/203 (70%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| ||||| || || ||||| | || || | ||||| || || Sbjct 905814 CATGCAAATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTAGAGGCTTC 905873 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||||| | || ||| || ||| || ||||| || || || || || || Sbjct 905874 TGATACTATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCA 905933 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAA-GATGATAGAAA---TGTCAGCGATT 25349 ||| | ||||| | | || |||||||| ||| |||| ||||| |||| |||| Sbjct 905934 ACAACGTCTCATATTTGCTGGTAAACAACTGGAAGGATGGCAGAAACCCTGTC--TGATT 905991 Query 25350 ACAATAT-TCAAAAAGAATCCAC 25371 |||| || ||||||||||| || Sbjct 905992 ACAACATCCCAAAAAGAATCAAC 906014 >seq1 Length=33571687 Score = 89.7 bits (98), Expect = 5e-13 Identities = 286/431 (66%), Gaps = 21/431 (5%) Strand=Plus/Plus Query 136767 ATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAATAGTAC 136826 |||||| || || |||||| ||| | | || || || || ||||| ||||| | Sbjct 24627111 ATTTAGAGACTGAGACTGATCAATGAAGGCACCTCGATCCGCAGCCATTTTCAAAATGGT 24627170 Query 136827 TTTTTGCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGC-GGAAT---TT 136882 |||||| ||| ||||| | ||||| | || | ||| | ||| | ||||| | Sbjct 24627171 CTTTTGCGAAATCTCCCAGACTGTTTTGTACAGTTTCTTCA-ATTCATCAGGAATCCTTG 24627229 Query 136883 CATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTT---TCATCATGAGATCAGTCG 136939 || || ||||| || || ||||||||| ||| |||| || |||| || ||| Sbjct 24627230 CAACG---TTCTGAACCGAACCGTTGTTTGCGATTATTTCATTCTTCATCTCCTC-GTCC 24627285 Query 136940 AGTATACGTTGCTCTCTATGA-GTTTATCGACGAGATGCTGATTTACTACTTGATATTCG 136998 | | | || ||| | | || | || || | ||| |||| || || || |||| Sbjct 24627286 CACAGA--TCCCTGTCTGTCAAGTCTTTCAACAA-ATGAGGATTGACGACCTGGAATTCT 24627342 Query 136999 CCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTTGTTA 137058 || || || || | | ||| | || || ||| | ||||| | |||||||||||| Sbjct 24627343 CCAGAAAGAACACGCCTGGTGTAAATGTTGCTTGTGTAGGGCTCTATCGATTCGTTGTTG 24627402 Query 137059 CCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCCGTAAA 137118 |||||||| ||||| |||| ||||| ||||| || | ||||| ||||| || | | Sbjct 24627403 CCCAAAATTTGTGCGGTCGAAGCTGTTGGCATTGGCGCAAGTAACAAAGAATTGCGAACA 24627462 Query 137119 CCGTGTACGGCCAATTGTTGC-TTGAGCTCTTTCCAGTTCCACAGATTGTTCGATTGGGT 137177 || ||| | | ||||| | || || || | |||||| ||| ||| || | | | || Sbjct 24627463 CCATGTTCTG-CAATTTTAGCTTTCAGGGCAGTCCAGTCCCAGAGACTG---GTTGGTGT 24627518 Query 137178 TATATTCCACA 137188 || |||||||| Sbjct 24627519 TACATTCCACA 24627529 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/210 (72%), Gaps = 10/210 (5%) Strand=Plus/Plus Query 137509 AAATCGAA-GCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTT 137567 |||||| | | |||| |||| | ||| |||| |||| ||||||||||| ||||| || Sbjct 24628006 AAATCGTACGTTTTTTTACTGGTATTTA-CAAACATATTAACGGCAATAGATGCTAAATT 24628064 Query 137568 GCATACGGCCGTTTCTGTATTGTCGCTG--TATTGTACAATTTCGGCGCAAAGATTGCTG 137625 ||| ||||| ||| || || | | || || |||| ||| | ||| | ||| ||| Sbjct 24628065 GCACACGGCTACTTC-GT-CTGGAGAAGAATACTGCACAACTTCCGTGCATAAATTACTG 24628122 Query 137626 TTTCGGATCACTCCCAA-ATTCTTTTGATTGTTTTTCTCGTTGAC-GTGATCTTTATATA 137683 ||| ||| | | |||| || | ||||||| ||| || | || ||||||||| |||| Sbjct 24628123 CTTCTGAT-AGTACCAAGGTTTTGTTGATTGGATTT-GCGATTACAGTGATCTTTGTATA 24628180 Query 137684 TCATATACGGAGTTCCGGTTTCGACTTGAG 137713 ||| || || ||||| ||||| ||||||| Sbjct 24628181 ACATGTAAGGGGTTCCAGTTTCAACTTGAG 24628210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445060472679360