Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 230 3e-55 seq14 114 2e-20 seq410 84.2 3e-11 >seq1 Length=33571687 Score = 230 bits (254), Expect = 3e-55 Identities = 326/456 (71%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||||||| |||||||||||||||| ||||||||| || | Sbjct 24628368 TCAAATTCCTCTCCCCAAACATCAGGTAATCCAGGACATTCATGTGGACACATTAAACTC 24628427 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635 ||| || || ||||| ||||| || | || || ||||| | ||| ||| || Sbjct 24628428 CACTTTGTGTCCTCAAGAACTCTCTTCATGAACAAGTCCGGGATCCATAAAGC-ATAGAA 24628486 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 || ||||| | ||| |||||||| || ||||| || ||||| ||||||||||| || | Sbjct 24628487 AAGGTCTCTCGCTCTGTTTTCTTCTTTACCTGTGTTCTTTTTGAGATCGAGAAATTCGAA 24628546 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 || |||| |||||| ||||| | ||| || || | |||| |||| || ||||| || Sbjct 24628547 GATGTCAGCATGCCACGGTTCCAAATACATGGCAAACGCTCCAGGTCTCTTGTTTCCACC 24628606 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 ||||| | ||| | ||||||||||| || ||||| | ||| |||| | ||||||||| Sbjct 24628607 TTGATCGACGTAACGCGCAGTGTTATTGTATACTCTAATCATAGGAACTAAACCATTAGA 24628666 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 | ||| ||||| |||||||| | | || | || | ||| | || | | ||| Sbjct 24628667 TACACCGTTTGTGCCAGAAATTCGAGTACCAGTGGCTCTTATAGTGTGAACACTCAAACC 24628726 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 || || || || ||| || || |||||| | |||| ||| ||||| || || || Sbjct 24628727 AATGCCACCAGCAGATTTGCTGACTAAAGCACATCTCTTCAGTGTATCATAAATTCCTTC 24628786 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || || || |||| ||||||| ||||| || Sbjct 24628787 AATACTGTCTTCAGTCATTGTAAGAAGGAAACAACT 24628822 Score = 105 bits (116), Expect = 9e-18 Identities = 220/327 (67%), Gaps = 8/327 (2%) Strand=Plus/Plus Query 69115 ATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTA 69174 ||||| || || || || ||| | || || ||||| |||||||| || || || ||||| Sbjct 24627886 ATACCAATGGGCCTGTGCCTCGTGTTGGACCTTTCTGCTTCTGGGATGGGGTAGTAATTT 24627945 Query 69175 ATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGA 69234 | || |||||||||| | ||||| | ||||| | || ||||| ||||| | Sbjct 24627946 AGGTCAATAATTTTATCCAAATTTCTTGTTGTGACTTTTGCGACTTCCTTAAGTTTTGCA 24628005 Query 69235 AAATCAAATCGTCCATCTA-------TAACAAACATATTCAGTGCTACAGATGCTAGATT 69287 ||||| | ||| | || | ||||||||||| | || | |||||||| ||| Sbjct 24628006 AAATCGTA-CGTTTTTTTACTGGTATTTACAAACATATTAACGGCAATAGATGCTAAATT 24628064 Query 69288 ACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACA 69347 || || ||||| || | | | | ||| || | | || || |||| |||||| | Sbjct 24628065 GCACACGGCTACTTCGTCTGGAGAAGAATACTGCACAACTTCCGTGCATAAATTACTGCT 24628124 Query 69348 TTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAAT 69407 | ||||||| || || ||||| ||||| || |||||| || ||||| | || Sbjct 24628125 TCTGATAGTACCAAGGTTTTGTTGATTGGATTTGCGATTACAGTGATCTTTGTATAACAT 24628184 Query 69408 AAACGGAGTACCAGTTTCAATCTGAGA 69434 | || || |||||||||| ||||| Sbjct 24628185 GTAAGGGGTTCCAGTTTCAACTTGAGA 24628211 >seq14 Length=421909 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 || || || ||||||| ||| | ||||||| |||||| | | | | ||| |||||| Sbjct 277594 TTTTTCATTTCATCATCCCAAAGATTTCTCTTTGTTAAATCATTTAATAAATGTGGATTA 277535 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| || || || || | | ||||||||||||||| || || || ||| Sbjct 277534 ACAATAATGAATTCTCCTGACAAAACACGTCTAGTGTAAATATTACTTGTGTAAGGCTCC 277475 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGC 68825 || |||||||| ||||||| || ||||| || || || |||||||| ||||| Sbjct 277474 ACTGATTCATTGTTTCCCAATATCTGAGCTGTAGAAGCTGTTGGCATTGGTGC 277422 Score = 109 bits (120), Expect = 8e-19 Identities = 199/290 (69%), Gaps = 1/290 (0%) Strand=Plus/Minus Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAA-TGTAGGAGATGCGTGAGT 70025 || || |||||||| || |||||||| | ||| ||| || |||||||||||| || || Sbjct 275836 CACCTGGACATTTGTTGGTGTATAGTACATGCAAAAAAAAAGTGTAGGAGATGCATGTGT 275777 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 ||| | ||||||| ||| ||||| || || || ||| | |||| | ||| Sbjct 275776 GAAGTAACGTTCAGAAGTATAATTATATGTCTCTATGACTTTTTCAAGATCCTCTTTATG 275717 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || ||| || || | ||| | ||||| || ||||| || ||| || ||| || Sbjct 275716 AAGAGCTACTGCAACTCTCATAAGCATATCTTGTGGTCGCTCAACCACTTGTCCATTAAT 275657 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 | || | ||| ||| |||| |||||||| ||||||||||| | ||| ||||| Sbjct 275656 CCTGAATAAGTAACTTTTCTCCAAGGTTTTAAATCCAAAATAGTTAAAGACAAAATCTCT 275597 Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATAT 70255 || || || ||||||||||| |||| |||| ||| || ||||| Sbjct 275596 GTCATAGTCTATGGCAGAATTTAGTCTATCTTTATGTTTTTGAATTATAT 275547 Score = 107 bits (118), Expect = 3e-18 Identities = 186/271 (69%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 69163 GGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCC 69222 ||||||| ||| | ||| |||||||||| | ||| | || |||||| || || Sbjct 276917 GGATAATGATTCAGATCAATAATTTTATCTAAATTCTTAGCAACAGTTTTAACAACTTCT 276858 Query 69223 TTTAGTTTGAGAAAATCAAA------TCGTCCATCTATAACAAACATATTCAGTGCTACA 69276 || | ||| ||||||| | | | || | |||||||||||| | || | Sbjct 276857 TTCAATTTTAGAAAATTGTAGTACTGTGTTTCAACATCAACAAACATATTAACAGCAATG 276798 Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 ||||||| |||||| |||||||| || || | | | |||||||| || || || ||| Sbjct 276797 GATGCTAAATTACACACTGCTACTTCGTTTGGAGAAGAGTATTGTATAATTTCAGTGCAT 276738 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 | |||||| | ||| ||||| || |||||||| ||||| || || ||| || Sbjct 276737 AAATTACTGCTTTTAATAGTTCCAAGATTTTGTTGATTTGATTTACGATTGCAGTGATCT 276678 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAA 69427 || || || ||| | ||||| |||||||||| Sbjct 276677 TTATAGAGCATATAAGGAGTTCCAGTTTCAA 276647 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005 ||| ||||| || | ||| ||||| | | || || | ||||||||| || ||||| Sbjct 277213 TGAACCATTGTAGGAAGAATATGGTCCATTTTCTTTGGCCAATTCACAACTAGCTTCTAA 277154 Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATC 69065 || || |||| | |||||||||||| | |||| || | || || ||| ||| || Sbjct 277153 AGCTCCAAAATATAATGTTTCGAAAATTTGAATATTTAGCTGCTGAGCCTCTTTACTCTC 277094 Query 69066 GAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 ||||||||| | | | | ||| || ||||||||||| || ||||| ||||| Sbjct 277093 GAATGGATAGCGCATTAACAAAAAAGCGTCTGCCAATCCTTGTACCCCGATACC 277040 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 ||||||||||||||||||||| || || |||||||| | ||||||||| || ||| Sbjct 276453 AATTCATCTCCCCAAACATCAGGTAAGCCTGGACATTCGTGTGGACACATTAAACTCCAT 276394 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 |||| || |||| || |||||||| ||| || ||||| | || ||| || Sbjct 276393 TTCTCATTGTCAAGTACTCTTTGCATAAATAAATCTGGGATCCATAAGGCATAAAACAGT 276334 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCT 69666 || || | ||||| |||||| || ||| Sbjct 276333 TCCCTTGCTCTATATTCTTCCTTACCT 276307 >seq410 Length=4553683 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 40112 TCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCA 40171 ||||||||||| ||||||||||||| || || || ||||||||||||| ||| || || Sbjct 2615640 TCTACTTCTTCTACTGTCCAAAACGAAGCTTCGGCTTTTTTGTACATGTGCCAAATGTCG 2615581 Query 40172 CGATATTGTATTGGAAAAATAACAAATCT 40200 | |||| |||||||| | |||||||| Sbjct 2615580 GGCCATTGGATTGGAAACAATACAAATCT 2615552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686856440376720