Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28]
6,098 sequences; 295,780,872 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq335 114 1e-20
seq158 96.9 3e-15
>seq335
Length=1594555
Score = 114 bits (126), Expect = 1e-20
Identities = 168/238 (71%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|||||||||| || | ||||| || || || ||| || || ||||| || || | |
Sbjct 905129 CCTCCTCTTAGACGCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATATTGTAGTCAGAA 905070
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || ||| | || || | ||||| || ||||| |||||||||||||| || | ||
Sbjct 905069 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGA 905010
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| | |||||||||| |||||| ||||| | | | || || | ||||||
Sbjct 905009 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATGGTGTCTGAGGCCTCCACT 904950
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCGA 39295
|||| ||||| |||| || |||| ||||| |||||||| |||||||| | || ||
Sbjct 904949 TCCAGAGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCATCTTGAAGCTGA 904892
Score = 109 bits (120), Expect = 5e-19
Identities = 171/244 (70%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100
|| ||||||| || |||||| | | || | || | ||| ||||| ||||| |
Sbjct 905600 ACAAAAATTTG--CATGCCTCCACGAAGTCGGAGAACAAGATGGAGCGTTGATTCTTTCT 905543
Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160
| || || ||||| | ||| |||| | |||| |||||||| ||||| ||||| || ||||
Sbjct 905542 GAATGTTGTAATCAGAAAGAGTTCTTCCGTCTTCAAGCTGCTTGCCAGCAAAAATCAGAC 905483
Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220
|||||||||| | || | | |||||||||| |||||| |||| | | | |
Sbjct 905482 GCTGCTGGTCTGGAGGGATACCCTCTTTGTCCTGGATTTTGGCCTTGACATTTTCAATTG 905423
Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280
|||| | || || |||| ||||| | ||||| |||| || || ||||||||||
Sbjct 905422 TATCTGAAGCTTCGACCTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATTT 905363
Query 39281 GCAT 39284
||||
Sbjct 905362 GCAT 905359
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|||||||||| || | ||||| || || || ||| || || ||||| || || | |
Sbjct 905357 CCTCCTCTTAGACGCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATATTGTAGTCAGAA 905298
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || ||| | || |||||||| ||||| ||||| || |||||||||||||| | ||
Sbjct 905297 AGAGTACGTCCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGAGGG 905238
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| | |||||||||| |||||| |||| | | | || || | || ||
Sbjct 905237 ATACCCTCTTTGTCCTGGATTTTGGCCTTGACATTTTCAATTGTGTCTGAAGCTTCGACC 905178
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| ||||| | ||||| |||| || || ||||||||||||||
Sbjct 905177 TCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATTTGCAT 905131
Score = 89.7 bits (98), Expect = 4e-13
Identities = 95/124 (77%), Gaps = 1/124 (1%)
Strand=Plus/Minus
Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113
|| ||||||||| | || | |||| ||| |||||| ||||||||| || || || ||
Sbjct 906505 CATGCCTCCTCTCAGACGAAGTACCAGATGGAGCGTGGACTCTTTTTGAATGTTGTAGTC 906446
Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172
| ||| || | | | || || |||||||| || ||||| || |||||||||||||| ||
Sbjct 906445 TGAAAGGGTCCTTCCATCCTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGG 906386
Query 39173 TGGG 39176
||||
Sbjct 906385 TGGG 906382
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/108 (78%), Gaps = 1/108 (1%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| || |||| ||| |||||| ||||||||| || || || || | ||| || | | |
Sbjct 906717 CGCAAGACCAGATGAAGCGTGGACTCTTTTTGAATGTTGTAGTCTGAAAGGGTCCTTCCA 906658
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176
|| || |||||||| || ||||| || |||||||||||||| ||||||
Sbjct 906657 TCCTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGTGGG 906610
>seq158
Length=288468
Score = 96.9 bits (106), Expect = 3e-15
Identities = 177/258 (69%), Gaps = 5/258 (2%)
Strand=Plus/Minus
Query 39030 CAGTATGCGT---AACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAG 39086
||||| |||| ||| ||||||| || ||||||||| || || || ||||| || ||
Sbjct 89676 CAGTAAGCGTCTTAACAAAAATTTG--CATGCCTCCTCTCAAACGCAAGACCAAGTGAAG 89619
Query 39087 CGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCC 39146
|| |||||||| ||||| || |||| || || ||| | || || ||||| || ||
Sbjct 89618 TGTAGATTCTTTTTGAATATTGTAGTCGGACAGAGTACGTCCATCCTCGAGCTGCTTACC 89559
Query 39147 CGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTT 39206
|| || || | | ||||||||| | ||| | || ||||||||| || || ||
Sbjct 89558 AGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCTTGAATCTTGGCCTT 89499
Query 39207 GAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGT 39266
|| || | | || || | ||| || || | ||||| | || || |||| ||
Sbjct 89498 GACATTCTCAATAGTGTCAGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAAGGT 89439
Query 39267 TTTAACAAAGATTTGCAT 39284
||||||||||| |||||
Sbjct 89438 CTTAACAAAGATCTGCAT 89421
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/220 (69%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 39066 TAAG-CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTC 39124
|||| ||||| ||||| || || || |||||| || ||||| || |||| || || |
Sbjct 91920 TAAGACGTAAGACCAAGTGGAGAGTCGACTCTTTCTGGATATTGTAGTCGGAGAGCGTAC 91861
Query 39125 GTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCT 39184
| | || || | ||||| || ||||| || | |||||||||||| | || | | ||
Sbjct 91860 GACCATCTTCCAATTGTTTTCCGGCAAAGATTAAACGCTGCTGGTCTGGCGGGATTCCCT 91801
Query 39185 CTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCG 39244
|||||||| |||||| |||| | | | |||||| | ||| || || | |
Sbjct 91800 CTTTGTCCTGGATTTTAGCCTTGACATTTTCGATCGTATCAGAGGCCTCGACTTCAAGTG 91741
Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||| |||| || |||| || || || ||||| |||||
Sbjct 91740 TGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 91701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429513676439474
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |