Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq335 114 1e-20 seq158 96.9 3e-15 >seq335 Length=1594555 Score = 114 bits (126), Expect = 1e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||||| || | ||||| || || || ||| || || ||||| || || | | Sbjct 905129 CCTCCTCTTAGACGCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATATTGTAGTCAGAA 905070 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || | ||||| || ||||| |||||||||||||| || | || Sbjct 905069 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGA 905010 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||||| |||||| ||||| | | | || || | |||||| Sbjct 905009 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATGGTGTCTGAGGCCTCCACT 904950 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCGA 39295 |||| ||||| |||| || |||| ||||| |||||||| |||||||| | || || Sbjct 904949 TCCAGAGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCATCTTGAAGCTGA 904892 Score = 109 bits (120), Expect = 5e-19 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||| | | || | || | ||| ||||| ||||| | Sbjct 905600 ACAAAAATTTG--CATGCCTCCACGAAGTCGGAGAACAAGATGGAGCGTTGATTCTTTCT 905543 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||| | ||| |||| | |||| |||||||| ||||| ||||| || |||| Sbjct 905542 GAATGTTGTAATCAGAAAGAGTTCTTCCGTCTTCAAGCTGCTTGCCAGCAAAAATCAGAC 905483 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 |||||||||| | || | | |||||||||| |||||| |||| | | | | Sbjct 905482 GCTGCTGGTCTGGAGGGATACCCTCTTTGTCCTGGATTTTGGCCTTGACATTTTCAATTG 905423 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| | || || |||| ||||| | ||||| |||| || || |||||||||| Sbjct 905422 TATCTGAAGCTTCGACCTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATTT 905363 Query 39281 GCAT 39284 |||| Sbjct 905362 GCAT 905359 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||||| || | ||||| || || || ||| || || ||||| || || | | Sbjct 905357 CCTCCTCTTAGACGCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATATTGTAGTCAGAA 905298 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || |||||||| ||||| ||||| || |||||||||||||| | || Sbjct 905297 AGAGTACGTCCATCTTCAAGCTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCTGGAGGG 905238 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||||| |||||| |||| | | | || || | || || Sbjct 905237 ATACCCTCTTTGTCCTGGATTTTGGCCTTGACATTTTCAATTGTGTCTGAAGCTTCGACC 905178 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | ||||| |||| || || |||||||||||||| Sbjct 905177 TCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATTTGCAT 905131 Score = 89.7 bits (98), Expect = 4e-13 Identities = 95/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| | || | |||| ||| |||||| ||||||||| || || || || Sbjct 906505 CATGCCTCCTCTCAGACGAAGTACCAGATGGAGCGTGGACTCTTTTTGAATGTTGTAGTC 906446 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 | ||| || | | | || || |||||||| || ||||| || |||||||||||||| || Sbjct 906445 TGAAAGGGTCCTTCCATCCTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGG 906386 Query 39173 TGGG 39176 |||| Sbjct 906385 TGGG 906382 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||| ||| |||||| ||||||||| || || || || | ||| || | | | Sbjct 906717 CGCAAGACCAGATGAAGCGTGGACTCTTTTTGAATGTTGTAGTCTGAAAGGGTCCTTCCA 906658 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || |||||||| || ||||| || |||||||||||||| |||||| Sbjct 906657 TCCTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGTGGG 906610 >seq158 Length=288468 Score = 96.9 bits (106), Expect = 3e-15 Identities = 177/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 39030 CAGTATGCGT---AACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAG 39086 ||||| |||| ||| ||||||| || ||||||||| || || || ||||| || || Sbjct 89676 CAGTAAGCGTCTTAACAAAAATTTG--CATGCCTCCTCTCAAACGCAAGACCAAGTGAAG 89619 Query 39087 CGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCC 39146 || |||||||| ||||| || |||| || || ||| | || || ||||| || || Sbjct 89618 TGTAGATTCTTTTTGAATATTGTAGTCGGACAGAGTACGTCCATCCTCGAGCTGCTTACC 89559 Query 39147 CGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTT 39206 || || || | | ||||||||| | ||| | || ||||||||| || || || Sbjct 89558 AGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCTTGAATCTTGGCCTT 89499 Query 39207 GAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGT 39266 || || | | || || | ||| || || | ||||| | || || |||| || Sbjct 89498 GACATTCTCAATAGTGTCAGAAGCCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAAGGT 89439 Query 39267 TTTAACAAAGATTTGCAT 39284 ||||||||||| ||||| Sbjct 89438 CTTAACAAAGATCTGCAT 89421 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 39066 TAAG-CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTC 39124 |||| ||||| ||||| || || || |||||| || ||||| || |||| || || | Sbjct 91920 TAAGACGTAAGACCAAGTGGAGAGTCGACTCTTTCTGGATATTGTAGTCGGAGAGCGTAC 91861 Query 39125 GTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCT 39184 | | || || | ||||| || ||||| || | |||||||||||| | || | | || Sbjct 91860 GACCATCTTCCAATTGTTTTCCGGCAAAGATTAAACGCTGCTGGTCTGGCGGGATTCCCT 91801 Query 39185 CTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCG 39244 |||||||| |||||| |||| | | | |||||| | ||| || || | | Sbjct 91800 CTTTGTCCTGGATTTTAGCCTTGACATTTTCGATCGTATCAGAGGCCTCGACTTCAAGTG 91741 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||| || |||| || || || ||||| ||||| Sbjct 91740 TGATGGTTTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 91701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429513676439474