Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq74093 170 2e-37 seq175855 113 5e-20 seq47065 107 2e-18 seq7894 91.5 2e-13 >seq74093 Length=5834 Score = 170 bits (188), Expect = 2e-37 Identities = 384/573 (67%), Gaps = 8/573 (1%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || || ||||| || || || ||||| || || || | | ||| | Sbjct 1124 AGGCTGAAGCCTCTTTTTGGACTGTAGAAGAAGTGGATCTCTCTTCTGATATGTCCGATT 1183 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 || | | | | |||||| || || ||||| || || || |||||||||| || | Sbjct 1184 GGAATAGACTTACCGACAATGAACGTCATTTTATTTCACATGTTTTGGCCTTTTTTGCTG 1243 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | |||||| || ||||| || |||||||| || || ||| | ||||| || || || Sbjct 1244 CTTCCGACGGTATAGTCAATGAAAATCTGGTTGAACGCTTCTCCCAGGAAGTTCAAGTTA 1303 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || || ||||| || ||||| || |||||||| ||||| ||||| ||||||| Sbjct 1304 CTGAGGCTCGTTGTTTCTATGGTTTTCAAATAGCCATGGAAAACGTTCACTCTGAAATGT 1363 Query 116895 ATTCGACCCTCATCGACACGTACGTGC--GCTCTT--CGGAGGAGAAGCTCCGTTTGTTG 116950 | | | || || || ||| | | | | | | |||| | || | || Sbjct 1364 ACAGCATTTTGATTGATACCTACATTACAGATAATGACCAACGAGA-GTACC---TATTT 1419 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010 || ||| | || || |||||| ||| ||| || || || ||||| | |||||| Sbjct 1420 AATGCCGTTGAAACAATGCCGGCCGTTAAACGTAAAGCTGATTGGGCTTTAGCCTGGATT 1479 Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 || | | || ||| ||||| ||| | | || || || || || || || | Sbjct 1480 TCCTCAAAATCAGCAAACTTTGGCGAACGCATCATTGCTTTTGCTGCTGTTGAAGGTATA 1539 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 ||||| || |||||||| | ||||||||| | |||||||| || || |||||||| Sbjct 1540 TTCTTCAGTGGAAGTTTCGCTTCTATATTTTGGTTGAAGAAACGTGGTCTTATGCCCGGT 1599 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 || || ||| || || | ||||| | || ||||| | || || || ||||| Sbjct 1600 CTTACATTCTCTAATGAATTGATCTCTCGTGATGAGGGCTTACACTGTGATTTTGCAGTG 1659 Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 || ||||||| ||||||||||| || || ||| Sbjct 1660 TTAATGTTCAAACATTTGGTGCAACGTCCAAGC 1692 >seq175855 Length=19510 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || |||||||||||| | || || || | || Sbjct 16427 ATGCAGATCTTCGTCAAAACTCTAACTGGTAAAACCATCACCTTGGAAGTTGAGCCTTCC 16486 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| ||||| | |||||||| || |||||| | || || Sbjct 16487 GACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 16546 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| || || || |||| || | |||||| | |||||||||| Sbjct 16547 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 16606 Query 40870 ATCCAGAAGGAGGCCAC 40886 ||||| ||||| |||| Sbjct 16607 ATCCAAAAGGAATCCAC 16623 >seq47065 Length=7920 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || ||||| || || |||||||| ||||| || | || |||||| | | Sbjct 2654 AATGCAGATTTTTGTAAAGACCCTAACGGGCAAGACCATTACACTTGAGGTCGAACCTTC 2713 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| |||| | || |||| ||||||||||| || || | || || Sbjct 2714 TGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGATCA 2773 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | || || ||||| |||| || | || ||||| ||| ||||| Sbjct 2774 GCAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGACGTACCCTATCCGATTACAA 2833 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||| ||||| | || ||||| ||||||| ||| Sbjct 2834 CATCCAAAAGGAATCAACTTTGCATTTAGTGTTACGC 2870 >seq7894 Length=2644 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || |||||||||||||| | || || || | || Sbjct 2311 ATGCAAATCTTTGTCAAGACACTGACTGGCAAAACCATCACTTTAGAGGTTGAGCCTTCC 2370 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | || | ||||||| ||||| || || ||||| | || || Sbjct 2371 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAA 2430 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| |||||||| |||| |||| |||||| | || ||||| Sbjct 2431 CAACGTTTAATCTTCGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 2490 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || || || || | || ||||| | || ||||| ||| | || ||| Sbjct 2491 ATTCAAAAAGAATCTACATTGCATTTGGTATTGCGTTTGCGTGGTGGC 2538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514031961076720