Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq7894 120 2e-22 seq175855 113 3e-20 seq47065 104 2e-17 seq55885 102 6e-17 >seq7894 Length=2644 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | || |||||||| | || |||||||| | ||| |||||||| Sbjct 2310 GCCACCACGAAGACGTAGAACCAAATGAAGTGTTGATTCCTTTTGAATATTATAATCGGA 2251 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || ||| |||| ||||||||||||||||||||||| || || |||||||| | || Sbjct 2250 CAAAGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGG 2191 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || || | ||||| | ||| || || || ||||| Sbjct 2190 GATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGAC 2131 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || || || || || |||| ||| ||||| || || |||||||| Sbjct 2130 CTCTAAGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTT 2080 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| | || |||||||| | || || ||||| | ||||||||| || Sbjct 2538 GCCACCACGCAAACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGA 2479 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| || |||| |||||||||||||| || || || || || |||||||| | || Sbjct 2478 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGG 2419 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || || |||| || | ||| || ||| || ||| || Sbjct 2418 GATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAAC 2359 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| || || || || || ||||| |||||||| Sbjct 2358 CTCTAAAGTGATGGTTTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 2311 >seq175855 Length=19510 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | |||| |||||||| | ||||| |||||| Sbjct 16653 CCACCACGAAGACGGAGAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 16594 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || |||||||| || || || || ||||| || |||||||| | || Sbjct 16593 AAGGTGCGACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGG 16534 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| | ||||| | ||| |||||| || ||| || Sbjct 16533 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 16474 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || ||||||||||| || || || ||||| Sbjct 16473 TCCAAGGTGATGGTTTTACCAGTTAGAGTTTTGACGAAGATCTGCAT 16427 >seq47065 Length=7920 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | |||||| ||||| | ||| |||||||| | ||||||||||| Sbjct 2881 CCACCACGGAGGCGTAACACTAAATGCAAAGTTGATTCCTTTTGGATGTTGTAATCGGAT 2822 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || ||||||||||| || |||||||| | || || ||||| | || Sbjct 2821 AGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGCTGATCTGGTGGA 2762 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || ||| ||| ||||||| | | | || || || ||||| Sbjct 2761 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAAGGTTCGAC 2703 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || || ||||| || || |||||||| |||||| Sbjct 2702 CTCAAGTGTAATGGTCTTGCCCGTTAGGGTCTTTACAAAAATCTGCATT 2654 >seq55885 Length=1496 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 ||||||| || || | |||||||||||||| || ||||| || | ||| || || | Sbjct 378 CGCCTCCGCGAAGACGTAACACCAAATGGAGTGTAGATTCCTTCTGAATATTATAGTCCG 319 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| || || | || ||||||||||| ||||| ||||| || ||||||||||| | | Sbjct 318 ACAAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATTAAACGCTGTTGATCTGGGG 259 Query 43001 GCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 | | |||||| || || ||| ||| | || || | ||| || || || || Sbjct 258 GAATACCTTCCTTATC-CTGAATCTTGGCCTTTACATTCTCAATAGTATCAGAAGGTTCC 200 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || || |||||||| || | || || || ||||| ||||| Sbjct 199 ACTTCCAAGGTGATGGTTTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380512765836126