Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq47065 181 2e-40 seq7894 167 5e-36 seq74093 161 2e-34 seq55885 152 1e-31 >seq47065 Length=7920 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| || || ||||| || || || || || || ||||| || | || ||||| Sbjct 2863 ACTAAATGCAAAGTTGATTCCTTTTGGATGTTGTAATCGGATAGGGTACGTCCATCTTCC 2804 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | ||||||||||||||||||||| | || ||||| || || ||||| ||||| |||||| Sbjct 2803 AATTGTTTTCCAGCAAAAATTAGACGTTGCTGATCTGGTGGAATTCCCTCTTTGTCCTGA 2744 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| |||||||| | ||||| |||||| ||||| |||||||| ||||| Sbjct 2743 ATCTTGGCTTTGACATTTTCGATAGTATCAGAAGGTTCGACCTCAAGTGTAATGGTCTTG 2684 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || |||||||| ||||||||| Sbjct 2683 CCCGTTAGGGTCTTTACAAAAATCTGCATT 2654 >seq7894 Length=2644 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| |||||||||||||| |||||||| || ||||| | || | |||||||| Sbjct 2520 TACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTGCGCCCGTCTTC 2461 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| ||||| || |||| | |||||||| ||||| |||||||| || || || Sbjct 2460 CAATTGTTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCTTG 2401 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| || ||||| |||||||| | |||||| ||| || ||||||| || || || || Sbjct 2400 AATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCTAAAGTGATGGTTTT 2341 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || ||||| || ||||| Sbjct 2340 GCCAGTCAGTGTCTTGACAAAGATTTGCAT 2311 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| | ||| ||||| || ||||||||||| || || | ||| | |||||| Sbjct 2294 AGAACCAAATGAAGTGTTGATTCCTTTTGAATATTATAATCGGACAAAGTGCGTCCGTCT 2235 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| || |||||||||| | |||||||| || || || || || ||||| Sbjct 2234 TCCAATTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGGATACCCTCCTTATCT 2175 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || || || || | ||||| |||||| ||||||| || || ||| Sbjct 2174 TGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACCTCTAAGGTGATGGTC 2115 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| | || || || || ||||||||||| Sbjct 2114 TTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTT 2080 >seq74093 Length=5834 Score = 161 bits (178), Expect = 2e-34 Identities = 365/541 (67%), Gaps = 21/541 (4%) Strand=Plus/Plus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | || ||||||||||||||||||||||| ||||| |||| ||| | |||| Sbjct 1124 AGGCTGAAGCCTCTTTTTGGACTGTAGAAGAAGTGGATCTCTCTTCTGATATGTCCGATT 1183 Query 268812 GGAA-AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870 |||| | | ||| || | ||| | ||||| || || || | || |||||||| Sbjct 1184 GGAATAGACTTACCGACA-ATGAACGTCATTTTATTTCACATGTTTTGGCCTTTTTTGCT 1242 Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATT 268930 | | || ||||| || || |||||||| || || |||| || || || || || Sbjct 1243 GCTTCCGACGGTATAGTCAATGAAAATCTGGTTGAACGCTTCTCCCAGGAAGTTCAAGTT 1302 Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990 |||| || | ||||| || || || || ||||| || ||||| |||| || || ||| Sbjct 1303 ACTGAGGCTCGTTGTTTCTATGGTTTTCAAATAGCCATGGAAAACGTTCACTCTGAAATG 1362 Query 268991 TACAGTCTATTAATAGATACTTA---TATAGATGAT-AACAACGAAAAGAAAAGACTATT 269046 ||||| | || || ||||| || || |||| || | |||||| | | ||||| Sbjct 1363 TACAGCATTTTGATTGATACCTACATTACAGATAATGACCAACGAGAGTA----CCTATT 1418 Query 269047 TTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGAT 269106 | | | | ||| ||| || | | ||| |||| |||||| | ||||| Sbjct 1419 TAATGCCGTTGAAACAATGCCGGCCGTTAAACGTAAAGCTGATTGGGCTTTAGCCTGGAT 1478 Query 269107 ------AAACGAT-AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAG 269159 ||| || ||| | || || ||| | | |||||||||| ||||| |||| Sbjct 1479 TTCCTCAAA--ATCAGCAAACTTT--GGCGAACGCATCATTGCTTTTGCTGCTGTTGAAG 1534 Query 269160 GTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGC 269219 |||||||||| || ||| || |||| ||||||||||||||| | || ||||||| Sbjct 1535 GTATATTCTTCAGTGGAAGTTTCGCTTCTATATTTTGGTTGAAGAAACGTGGTCTTATGC 1594 Query 269220 CAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCG 269279 | || | || |||||||| |||||||| | || || || |||||||| || || | Sbjct 1595 CCGGTCTTACATTCTCTAATGAATTGATCTCTCGTGATGAGGGCTTACACTGTGATTTTG 1654 Query 269280 C 269280 | Sbjct 1655 C 1655 >seq55885 Length=1496 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| | ||||||||| ||||||||||||||||| || | ||| | || ||||| | ||| Sbjct 353 ATGGAGTGTAGATTCCTTCTGAATATTATAGTCCGACAAAGTGCGGCCATCTTCCAATTG 294 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| || || ||||||| | ||||||||| || || || ||||| |||||||||||||| Sbjct 293 TTTACCGGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCCTTATCCTGAATCTT 234 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || |||||||| || | ||||| |||||| || || | || || || || ||||| Sbjct 233 GGCCTTTACATTCTCAATAGTATCAGAAGGTTCCACTTCCAAGGTGATGGTTTTTCCAGT 174 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 | || || || || |||||||| Sbjct 173 CAAGGTCTTGACGAAAATCTGCAT 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148678859226676