Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq46724 89.7 1e-13 seq15973 84.2 4e-12 seq23777 80.6 5e-11 >seq46724 Length=9349 Score = 89.7 bits (98), Expect = 1e-13 Identities = 231/346 (67%), Gaps = 7/346 (2%) Strand=Plus/Minus Query 7924 TGGTAAAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGG 7983 ||| | ||| || | ||||| |||||||||| | || ||||| | || |||| || Sbjct 2991 TGGAAGAGGATTTGTAAACAACTTAATCAACAAATTACCTGTTGAATTACATCTACCTGG 2932 Query 7984 TTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGG 8043 |||||||| || || || |||||||| | || | ||||| |||| || ||| Sbjct 2931 TTATCAGTTTTGTGGACCTGGTACAAAACTTCAAAAACGTTTAGCAAGAGGAGACAAAGG 2872 Query 8044 TATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGA 8103 |||||| ||||| || || || | ||||||||||| | || || | |||| | Sbjct 2871 AATAAATTTATTGGATGCGGCTTGCAGAGAACACGATATTTCATATTC--ACAATC-AAA 2815 Query 8104 AAATTTGGAAGCTCGTCACGAGGCTGATAAAATTCTTGCTGAGAAAGCGTGGCAACGATT 8163 | || | || | | || | |||||| ||||| | ||||| || || ||||||||| | Sbjct 2814 AGATATAGACACAAGACATAAAGCTGATCAAATTTTAGCTGAAAAGGCCTGGCAACGAGT 2755 Query 8164 TCAAGCGAGAGACGCTGCTATTGGTGAAAAAGCTGCTGCTTGGAGTGTAAATAAAATCAT 8223 | || | | ||| || | | | ||| ||| || ||| ||||| || || Sbjct 2754 TAAATCTAAAGATAGTGATTTCAGAGAACGGGCTAACGCCTGGTTTGTAACGAACGCTAT 2695 Query 8224 GAA-GTTAAAAAGACGTTTCGGTATGGGGATTa--aaaaagaaaaa 8266 ||| | |||| || |||| ||| |||| | | ||||||||||| Sbjct 2694 GAAGGCTAAAGTGAAGTTT-GGTTTGGGCTTGAAGAAAAAGAAAAA 2650 >seq15973 Length=6306 Score = 84.2 bits (92), Expect = 4e-12 Identities = 168/247 (68%), Gaps = 9/247 (4%) Strand=Plus/Minus Query 7924 TGGTAAAGGTTTGTTCAACAATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGG 7983 ||| | ||| || | ||||| |||||||||| | || ||||| | || |||| | Sbjct 1326 TGGAAGAGGATTTGTAAACAACTTAATCAACAAATTACCTGTTGAATTACATCTACCTGT 1267 Query 7984 TTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGG 8043 |||||||| || ||||| || ||||| | || | ||||| |||| || |||| Sbjct 1266 TTATCAGTTTTGTGGTCCTGGAACAAAACTTCAAAAACGTTTAGCAAGAGGAGACACAGG 1207 Query 8044 TATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGA 8103 |||||| |||||||| || || | ||||||||||| | |||||| || ||| Sbjct 1206 AATAAATTTATTGGACGCAGCTTGCAGAGAACACGATATTTCATACTCACAA-----TGA 1152 Query 8104 AA--ATTTGGAAGCTCGTCACGAGGCTGATAAAATTCTTGCTGAGAAAGCGTGGCAACGA 8161 || || | || | || | |||||| ||||| | ||||| || || || ||||| Sbjct 1151 AAAGATATAGACACAACACATAAAGCTGATCAAATTTTAGCTGAAAAGGCCTG--AACGA 1094 Query 8162 TTTCAAG 8168 || ||| Sbjct 1093 GTTAAAG 1087 >seq23777 Length=5652 Score = 80.6 bits (88), Expect = 5e-11 Identities = 182/273 (67%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 7218 AAATCCATATTTAT---TCCAACATGCCGAGCATAAATCTCTGAATGAGTTGTATGGCAT 7274 |||||||||||||| |||| || | ||| | ||| ||| || || | ||| Sbjct 2820 AAATCCATATTTATAATTCCAGCACTCACTGCAAAGATCAACAAATTGTTTATACGTCAT 2879 Query 7275 GTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAG 7334 || | | || | ||||| ||| ||||| || | |||||||||||| || || | Sbjct 2880 ATCACCAATAACTTAATCATTATATATATGTTTTAAATTCATTTCATCCTGTTTAAATAT 2939 Query 7335 CACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACA 7394 || | | ||||||||||| | || || | || || ||| ||||| ||||||| Sbjct 2940 TACAATCATATTTGCATTATCGCGTATTAGATATTTAGGAATTTTCGTATATGTTTGACT 2999 Query 7395 GAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATC 7454 ||||| ||| || | || || |||| ||||| ||||| | |||| || || Sbjct 3000 TAGATAAAAGTAATCTATATGTTTATGTCTTCCCATACAGAAGTAGTCTTTTATAGTATT 3059 Query 7455 CTGTTTTTCACAAGCAACATCGTCAAATATCAT 7487 ||||| |||||| ||||| || ||||| || Sbjct 3060 TTGTTTCTCACAAATAACATTATCGAATATTAT 3092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97759922220238