Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq167261 149 4e-31 seq7894 147 1e-30 seq55885 132 3e-26 seq175855 120 2e-22 seq47065 118 7e-22 >seq167261 Length=1313 Score = 149 bits (164), Expect = 4e-31 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || |||||||| ||||| | ||| ||||| ||||| |||||||||||||| ||| Sbjct 1035 AATGTAAATCGCAATGTCACTGACATTTTCTATCGCTATAAAATGCCGCGCATACAAGCC 1094 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 |||||||| || || || || || |||||||| |||||||| || ||| ||||||| ||| Sbjct 1095 AAGGTCGAAGGCAAAGGCAATGGCATTAAAACGGTCATTGTTAATATGGCTGAAGTGGCT 1154 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 | || | || || || |||||||| || || || ||||| || || ||| | |||||| Sbjct 1155 AGAGCCATAGGCCGTCCAGCCACCTATCCAACCAAGTATTTTGGTTGTGAATTGGGCGCT 1214 Query 6354 CAGACGCAGTTTGAT 6368 || || || |||||| Sbjct 1215 CAAACTCAATTTGAT 1229 >seq7894 Length=2644 Score = 147 bits (162), Expect = 1e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||||| || |||||||||||||| ||||| ||| Sbjct 2309 CCACCACGAAGACGTAGAACCAAATGAAGTGTTGATTCCTTTTGAATATTATAATCGGAC 2250 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| |||| || |||||||| |||||||| |||| ||||||||||| | |||| Sbjct 2249 AAAGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGG 2190 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || || |||||| ||| || |||| | |||||| | ||| || Sbjct 2189 ATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACC 2130 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||| || || || || || || || || |||||||| |||||||| ||| Sbjct 2129 TCTAAGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTTT 2079 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||||||||| |||||||| | || || ||||||||||||||||||||| Sbjct 2537 CCACCACGCAAACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGAC 2478 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || |||| || |||||||| || || || |||| ||||||||||| | ||| Sbjct 2477 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGG 2418 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| |||||| || ||||| | | |||||| | ||||| Sbjct 2417 ATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACC 2358 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || || ||||| || |||| || || || || || |||||| Sbjct 2357 TCTAAAGTGATGGTTTTGCCAGTCAGTGTCTTGACAAAGATTTGCATG 2310 >seq55885 Length=1496 Score = 132 bits (146), Expect = 3e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| ||||||||||| || || ||||| |||||||| || || |||||| || | Sbjct 365 ACGTAACACCAAATGGAGTGTAGATTCCTTCTGAATATTATAGTCCGACAAAGTGCGGCC 306 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || |||||||| ||||| || |||| || |||||||| | ||| | ||||| || Sbjct 305 ATCTTCCAATTGTTTACCGGCGAAAATTAAACGCTGTTGATCTGGGGGAATACCTTCCTT 246 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||| || ||| ||||||| | |||||| | ||| ||||| || || || Sbjct 245 ATCCTGAATCTTGGCCTTTACATTCTCAATAGTATCAGAAGGTTCCACTTCCAAGGTGAT 186 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || |||||||| || ||||| |||||||| Sbjct 185 GGTTTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 150 Score = 105 bits (116), Expect = 4e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| ||||| ||||| ||| |||||||| |||||||| || | Sbjct 150 TACCACCACGGAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGGATATTGTAGTCGG 91 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| |||| || || ||||| ||||| || || || ||||||||||| | || Sbjct 90 ACAAAGTACGACCGTCCTCCAACTGTTTACCGGCGAAGATGAGACGTTGTTGATCTGGGG 31 Query 38209 GGACGCCTTCTTTGTC 38224 | | ||||| ||||| Sbjct 30 GAATACCTTCCTTGTC 15 >seq175855 Length=19510 Score = 120 bits (132), Expect = 2e-22 Identities = 177/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||| | |||| |||||||| || ||||| || | Sbjct 16655 TACCACCACGAAGACGGAGAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGG 16596 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || ||||| || || || || || | ||||||||||| | || Sbjct 16595 ACAAGGTGCGACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGGG 16536 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||| ||| ||||| | | ||| || | |||| Sbjct 16535 GGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 16476 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGC 38328 |||| || || || |||||||| || | ||||| ||||| |||||||| | | |||| Sbjct 16475 CTTCCAAGGTGATGGTTTTACCAGTTAGAGTTTTGACGAAGATCTGCATCTGTAACAAAA 16416 Query 38329 TCGAATATAAC 38339 | |||| ||| Sbjct 16415 TTAAATAAAAC 16405 >seq47065 Length=7920 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | || ||||| ||||| | ||| |||||||| || |||||||| || Sbjct 2882 ACCACCACGGAGGCGTAACACTAAATGCAAAGTTGATTCCTTTTGGATGTTGTAATCGGA 2823 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | |||| | || || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 2822 TAGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGCTGATCTGGTGG 2763 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || ||||||||| ||| || || ||||| | || |||||| | ||| || Sbjct 2762 AATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAAGGTTCGAC 2703 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | |||||| || || ||||| | ||| || || || |||||||| Sbjct 2702 CTCAAGTGTAATGGTCTTGCCCGTTAGGGTCTTTACAAAAATCTGCAT 2655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334194664391357