Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq7894 122 6e-23 seq175855 113 3e-20 seq55885 104 2e-17 seq145162 95.1 8e-15 >seq7894 Length=2644 Score = 122 bits (134), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCT--TTCTTTTTGTATATTATAATCG 39549 ||| || || | ||| || |||||||| ||||| | ||| ||||| |||||||||||| Sbjct 2310 GCCACCACGAAGACGTAGAACCAAATG--AAGTGTTGATTCCTTTTGAATATTATAATCG 2253 Query 39550 GCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609 | |||| |||| | || ||||||||||| ||| ||||||||||||| || ||||| | | Sbjct 2252 GACAAAGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGG 2193 Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 || | || || || || ||||| || | || | | || || | ||| Sbjct 2192 GGGATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCG 2133 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || || || || |||||||| || |||||||||||||| Sbjct 2132 ACCTCTAAGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 2083 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||||||||| |||||||||||| || ||||||||| ||||| ||||| | Sbjct 2538 GCCACCACGCAAACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGA 2479 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || ||||||||||| || | || |||||||| || ||||| | || Sbjct 2478 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGG 2419 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| ||||| ||||| | | | || || | || || Sbjct 2418 GATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAAC 2359 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| || ||||| || || | || || || ||||| |||||| Sbjct 2358 CTCTAAAGTGATGGTTTTGCCAGTCAGTGTCTTGACAAAGATTTGCATG 2310 >seq175855 Length=19510 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| |||||| ||| ||||| || || || |||| | Sbjct 16653 CCACCACGAAGACGGAGAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 16594 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||||||| || || | || || ||||| || ||||| | ||| Sbjct 16593 AAGGTGCGACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGG 16534 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| || | | | | ||||| | || || Sbjct 16533 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 16474 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| |||| |||||| |||||||||||||| Sbjct 16473 TCCAAGGTGATGGTTTTACCAGTTAGAGTTTTGACGAAGATCTGCAT 16427 >seq55885 Length=1496 Score = 104 bits (114), Expect = 2e-17 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 |||| || || | ||| | |||||||| | || ||| || || |||||||| || | Sbjct 378 CGCCTCCGCGAAGACGTAACACCAAATGGAGTGTAGATTCCTTCTGAATATTATAGTCCG 319 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 |||| ||| |||| ||||||||||| ||| | |||||||||||||| ||||| | || Sbjct 318 ACAAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATTAAACGCTGTTGATCTGGGG 259 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTT 39667 | | ||||| || || | | | || | |||| || || | | || || | || Sbjct 258 GAATACCTTCCTTATC-CTGAATCTTGGCCTTTACAT--TCTCAATAGTATCAGAAGGTT 202 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| || || ||||| || || || || || ||||| |||||||| Sbjct 201 CCACTTCCAAGGTGATGGTTTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 150 >seq145162 Length=2015 Score = 95.1 bits (104), Expect = 8e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGA 42571 || || || ||||| || | ||||| | ||| |||| ||| | || ||||||||| | Sbjct 1971 ATATTGCCCAAATCGCCTACATGTCTATTTTCGTCATTGGGTGCCCCATGTTCTTTACCA 1912 Query 42572 AAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATGT 42631 | ||||| || ||| |||||| || || || ||||| ||| | || ||||||||||| Sbjct 1911 CATGGATTGAAGTGTGGACCAGCTGAGGTGCAACCATTAGTGTTGTCACCAAATTCATGA 1852 Query 42632 ATATGAAAACCGTGATAACC 42651 | |||||||||||| |||| Sbjct 1851 ACATGAAAACCGTGCAAACC 1832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346589154624251