Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq74093 167 3e-36 seq7894 125 1e-23 seq55885 114 2e-20 >seq74093 Length=5834 Score = 167 bits (184), Expect = 3e-36 Identities = 478/729 (66%), Gaps = 19/729 (3%) Strand=Plus/Minus Query 17972 AATTCGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTC 18031 ||||| |||||| | ||| || |||||||| | ||||| ||||| || | |||||| Sbjct 1841 AATTCCACTAATAAGCGATCAGCAACAAATTCAATATATTCGGACATTAATCCACAATTC 1782 Query 18032 ATACCTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGAC 18091 || || | || | ||| || |||||| | | || |||| || || | ||||| | Sbjct 1781 ATGCCAATTAAATCAACAGGCAGGGCATCAGTTAAGAACTCTTGTTCAATTTTAACAGCC 1722 Query 18092 TCTTTTATTATGTTTATTACCCTAGATTT---TGGCAATTT-ATTAATTATGTGATTATA 18147 ||| || || | || | ||| || ||| || | || | | ||| || Sbjct 1721 TCTGAAATAATTTCAATAATCCTCTCCTTGCTTGGACGTTGCACCAAATGTTTGAACATT 1662 Query 18148 ATATAATAAACAC-GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTAC 18206 | |||| ||||||||| |||||| || ||||| | || || ||||| ||| Sbjct 1661 A--------ACACTGCAAAATCACAGTGTAAGCCCTCATCACGAGAGATCAATTCATTAG 1610 Query 18207 TAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTAC 18266 || || | |||||||| | ||| | ||| || | ||||||||| || |||||||| | Sbjct 1609 AGAATGTAAGACCGGGCATAAGACCACGTTTCTTCAACCAAAATATAGAAGCGAAACTTC 1550 Query 18267 TAGAAAAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTAT 18325 | ||||||||||| ||||| ||| || || || || | | ||| || ||| | | Sbjct 1549 CACTGAAGAATATACCTTCAACAGCA-GCAAAAGCAATGATGCGTTC-GCCAAAGTTTGC 1492 Query 18326 TTATTGCTCAGTA--TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATAC 18383 | ||| | || | |||| | ||||| || ||| | ||| || Sbjct 1491 TGATTT-TGAGGAAATCCAGGCTAAAGCCCAATCAGCTTTACGTTTAACGGCCGGCATTG 1433 Query 18384 TCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTA 18443 | || | |||||||| | | ||| || | |||| | || || || || || | Sbjct 1432 TTTCAACGGCATTAAATAGGTACTCTCGTTGGTCATTATCTGTAATGTAGGTATCAATCA 1373 Query 18444 ACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATC 18503 | | ||||||||||| || | | ||||||| ||||| ||||||| ||| || | | Sbjct 1372 AAATGCTGTACATTTCAGAGTGAACGTTTTCCATGGCTATTTGAAAACCATAGAAACAAC 1313 Query 18504 TAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATAC 18563 |||||| | | ||||| || | || | ||| |||| ||| ||||| ||||||| Sbjct 1312 GAGCCTCAGTAACTTGAACTTCCTGGGAGAAGCGTTCAACCAGATTTTCATTGACTATAC 1253 Query 18564 CGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA 18623 |||| | || || ||||| |||||||||| | ||| ||||| |||||| || | | Sbjct 1252 CGTCGGAAGCAGCAAAAAAGGCCAAAACATGTGAAATAAAATGACGTTCATTGTCGGTAA 1193 Query 18624 GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 | | ||||| || ||||| || ||||| |||||||| ||||||||||| | Sbjct 1192 GTCTATTCCAATCGGACATATCAGAAGAGAGATCCACTTCTTCTACAGTCCAAAAAGAGG 1133 Query 18684 ATTCGGCCT 18692 ||| |||| Sbjct 1132 CTTCAGCCT 1124 >seq7894 Length=2644 Score = 125 bits (138), Expect = 1e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | || || || ||||| || || || || ||||| |||||| | Sbjct 2080 AAAATGCAGATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCTTAGAGGTCGAACCT 2139 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| |||| ||||| || |||||| |||||||| || || || || ||||| Sbjct 2140 TCTGATACTATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGTATCCCCCCAGAT 2199 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | || |||| |||||| || || | ||||| | ||||| || |||||| Sbjct 2200 CAACAACGTTTAATTTTTGCCGGCAAACAATTGGAAGACGGACGCACTTTGTCCGATTAT 2259 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 ||||| || ||| || | || |||||||| || Sbjct 2260 AATAT-TCAAAAGGAATCAACACTTCATTTGGT 2291 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||||||||| || |||||||| || ||| ||||||| ||| ||| Sbjct 2539 ATGCAAATATTTGTTAAAACATTAACGGGAAAAACAATAACACTAGAAGTTGAACCTTCC 2598 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGG 155926 |||| |||| ||| || || |||||| |||||||| ||||| Sbjct 2599 GATACTATTGAAAATGTTAAGGCTAAAATCCAAGATAAGGAAGG 2642 >seq55885 Length=1496 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||||||||| || || || ||||| ||| |||| Sbjct 150 ATGCAGATTTTCGTCAAGACCTTGACTGGAAAAACCATCACCTTGGAAGTGGAACCTTCT 209 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || || || || ||||| ||||| || || ||||| ||| Sbjct 210 GATACTATTGAGAATGTAAAGGCCAAGATTCAGGATAAGGAAGGTATTCCCCCAGATCAA 269 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || |||| |||||||| || | |||||| | | ||||| || || |||||| Sbjct 270 CAGCGTTTAATTTTCGCCGGTAAACAATTGGAAGATGGCCGCACTTTGTCGGACTATAAT 329 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || || | || || ||||| |||||| Sbjct 330 ATTCAGAAGGAATCTACACTCCATTTGGTGTTA 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730185519905200