Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7894 158 2e-33 seq175855 150 4e-31 seq47065 143 5e-29 seq55885 134 3e-26 >seq7894 Length=2644 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | ||| ||||| ||||| || |||| ||||| ||||| |||||| Sbjct 2540 ATGCCACCACGCAAACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCA 2481 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || | || ||||||||||| ||||| |||||||| | |||||||| || Sbjct 2480 GACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCGAAGATTAAACGTTGTTGATCTGGA 2421 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| |||||| ||| ||||| |||| ||| || | || Sbjct 2420 GGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCA 2361 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||| |||||||| ||||| | ||| || | ||| || ||||| Sbjct 2360 ACCTCTAAAGTGATGGTTTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 2311 Score = 140 bits (154), Expect = 6e-28 Identities = 173/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | |||||||| || ||||| | || | || ||| || ||||||||||| Sbjct 2312 ATGCCACCACGAAGACGTAGAACCAAATGAAGTGTTGATTCCTTTTGA-ATATTATAATC 2254 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || ||| | || ||||||||||| || ||||| ||||| | |||||||| || Sbjct 2253 GGACAAAGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGG 2194 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || |||||||| |||||| || || || |||| ||| || | ||| Sbjct 2193 GGGGATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTC 2134 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || |||| || ||||| || |||||||| || || | || ||||||||||| Sbjct 2133 GACCTCTAAGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTT 2080 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 ||||| |||||||| |||||| || ||||| |||| ||| || | ||| |||||| Sbjct 2642 CCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCAATAGTATCGGAAGGTTCAACTTCT 2583 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||||||||||| |||||| ||||| Sbjct 2582 AGTGTTATTGTTTTTCCCGTTAATGTTTTAACAAATATTTGCAT 2539 >seq175855 Length=19510 Score = 150 bits (166), Expect = 4e-31 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| |||||||| | |||||| | || ||||||||||| | || || ||| | Sbjct 16664 GTTCAATGATACCACCACGAAGACGGAGAACCAAATGTAAAGTGGATTCCTTTTGGATGT 16605 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || || || || || |||| |||||||| |||||||| ||||| || | |||| Sbjct 16604 TGTAGTCGGACAAGGTGCGACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTT 16545 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| || || || |||||||| ||||| |||||| || ||||| |||| || | Sbjct 16544 GATCTGGGGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGG 16485 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | | || ||||| | || |||||||||||||||| ||||| | || |||||||| Sbjct 16484 AAGGCTCAACTTCCAAGGTGATGGTTTTACCAGTTAGAGTTTTGACGAAGATCTGCAT 16427 >seq47065 Length=7920 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | || ||||| |||||||| ||||| | || || ||| || ||||| || Sbjct 2882 ACCACCACGGAGGCGTAACACTAAATGCAAAGTTGATTCCTTTTGGATGTTGTAATCGGA 2823 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| ||||||||||| |||||||| |||| | || ||||| ||||| Sbjct 2822 TAGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGCTGATCTGGTGG 2763 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| ||||| || || || || ||| ||||| |||| ||| || | ||| || Sbjct 2762 AATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCAGAAGGTTCGAC 2703 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || |||||||| || || |||| || || | ||| ||||||||| Sbjct 2702 CTCAAGTGTAATGGTCTTGCCCGTTAGGGTCTTTACAAAAATCTGCATT 2654 >seq55885 Length=1496 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | ||||||||| || ||||| | |||| || || |||||||| || || Sbjct 376 CCTCCGCGAAGACGTAACACCAAATGGAGTGTAGATTCCTTCTGAATATTATAGTCCGAC 317 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| |||||||||||||| || || ||||| | ||||||||| || || Sbjct 316 AAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATTAAACGCTGTTGATCTGGGGGA 257 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| ||||| || || || |||||||| |||| ||| || | ||| ||| Sbjct 256 ATACCTTCCTTATCCTGAATCTTGGCCTTTACATTCTCAATAGTATCAGAAGGTTCCACT 197 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || |||||||| ||||| || || || | || |||||||| Sbjct 196 TCCAAGGTGATGGTTTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982154711463450