Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7894 150 3e-31 seq55885 140 6e-28 seq47065 131 3e-25 seq175855 127 4e-24 seq74093 86.0 1e-11 >seq7894 Length=2644 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| |||| || ||||| | || | || || |||||||||||| Sbjct 2312 ATGCCACCACGAAGACGTAGAACCAAATGAAGTGTTGATTCCTTTTGAATATTATAATCG 2253 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| ||| |||| ||||||||||| || ||||||||||| | ||||| || || Sbjct 2252 GACAAAGTGCGTCCGTCTTCCAATTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGG 2193 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| |||||| || || || |||||||| || | ||| Sbjct 2192 GGGATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCG 2133 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||| || ||||| || |||||||| || || | ||| ||||||||||| Sbjct 2132 ACCTCTAAGGTGATGGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTT 2080 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 || ||||| ||||| || |||| ||||| |||||| ||||| || || | || || Sbjct 2525 CGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGACAATGTGCGCCCG 2466 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| ||||| || ||||| | ||||| || || || |||||||| || Sbjct 2465 TCTTCCAATTGTTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCTTCCTTG 2406 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| ||| ||||| |||||||| || | || || |||| ||| ||| Sbjct 2405 TCTTGAATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAACCTCTAAAGTGATG 2346 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| | ||| || | || || ||||| Sbjct 2345 GTTTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 2311 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 ||||| |||||||| |||||| || ||||| |||||||| || | ||| |||||| Sbjct 2642 CCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCAATAGTATCGGAAGGTTCAACTTCT 2583 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || ||||||||||||| ||||| ||||| Sbjct 2582 AGTGTTATTGTTTTTCCCGTTAATGTTTTAACAAATATTTGCAT 2539 >seq55885 Length=1496 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| ||||| || ||||| | |||| || || ||||||||| || || Sbjct 376 CCTCCGCGAAGACGTAACACCAAATGGAGTGTAGATTCCTTCTGAATATTATAGTCCGAC 317 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | || |||||||||||||| || |||||||| | |||||| || || || Sbjct 316 AAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATTAAACGCTGTTGATCTGGGGGA 257 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| ||||| || || || |||||||| |||||||| || | ||| ||| Sbjct 256 ATACCTTCCTTATCCTGAATCTTGGCCTTTACATTCTCAATAGTATCAGAAGGTTCCACT 197 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | || |||||||| ||||| || || || | ||| |||||||| Sbjct 196 TCCAAGGTGATGGTTTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 150 >seq47065 Length=7920 Score = 131 bits (144), Expect = 3e-25 Identities = 178/247 (72%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 ||| ||| ||||| | |||||| | || ||||| |||||||| ||||| | || || Sbjct 2900 CTTCTTACGTTTCTTTGCACCACCACGGAGGCGTAACACTAAATGCAAAGTTGATTCCTT 2841 Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943 || || ||||| |||| | ||| | || ||||||||||| ||||||||||||| Sbjct 2840 TTGGATGTTGTAATCGGATAGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAAATTAG 2781 Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 172003 | || || || ||||| ||||| ||||| || || || || ||| ||||| || Sbjct 2780 ACGTTGCTGATCTGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGAT 2721 Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063 |||||| || | ||| || || || |||||||| || || |||| || || | || || Sbjct 2720 AGTATCAGAAGGTTCGACCTCAAGTGTAATGGTCTTGCCCGTTAGGGTCTTTACAAAAAT 2661 Query 172064 CTGCATT 172070 ||||||| Sbjct 2660 CTGCATT 2654 >seq175855 Length=19510 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | || ||||||||||| | || || || || || Sbjct 16659 ATGATACCACCACGAAGACGGAGAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAG 16600 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || |||||||| |||||||| || || || | ||||| || Sbjct 16599 TCGGACAAGGTGCGACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCT 16540 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || |||||||| ||||| |||||| || ||||| ||||| || || | Sbjct 16539 GGGGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGC 16480 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| | || |||||||||||||||| ||||| | ||| |||||||| Sbjct 16479 TCAACTTCCAAGGTGATGGTTTTACCAGTTAGAGTTTTGACGAAGATCTGCAT 16427 >seq74093 Length=5834 Score = 86.0 bits (94), Expect = 1e-11 Identities = 441/711 (62%), Gaps = 13/711 (2%) Strand=Plus/Minus Query 38948 TAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAA 39007 |||||| | ||| || |||||||||| ||||| |||||||| |||||||||| || | Sbjct 1833 TAATAAGCGATCAGCAACAAATTCAATATATTCGGACATTAATCCACAATTCATGCCAAT 1774 Query 39008 TAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat 39067 ||| | || || | |||||| | || |||| ||| |||| ||||| | | ||| Sbjct 1773 TAAATCAACAGGCAGGGCATCAGTTAAGAACTCTTGTTCAATTTTAACAGCCTCTGAAAT 1714 Query 39068 tatc---ataattatattattttttgataatttatatttaatatgattcgcatataGTAA 39124 || ||||| | | || ||| | || | ||| | | | | || ||| Sbjct 1713 AATTTCAATAATCCTCTCCTTGCTTGG-ACGTTGCACCAAATGT---TTGAACAT--TAA 1660 Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||||||||| ||||| || || || | ||| || ||||||||| || || | Sbjct 1659 CACTGCAAAATCACAGTGTAAGCCCTCATCACGAGAGATCAATTCATTAGAGAATGTAAG 1600 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 || ||||| | || | || || | ||||||||| || || ||||| | | ||||| Sbjct 1599 ACCGGGCATAAGACCACGTTTCTTCAACCAAAATATAGAAGCGAAACTTCCACTGAAGAA 1540 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAAT--TTATCATCT 39302 |||||| || ||| ||||| || || || | | | ||||| || | || | | Sbjct 1539 TATACCTTCAACAGCAGCAAAAGCAATGATGCGTTCGCCAAAGTTTGCTGATTTTGAGG- 1481 Query 39303 AAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 39362 ||||||| || |||||||| ||||| ||| | | || || |||| | || Sbjct 1480 -AAATCCAGGCTAAAGCCCAATCAGCTTTACGTTTAACGGCCGGCATTGTTTCAACGGCA 1422 Query 39363 TTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATAC 39422 ||||||| | | ||| Sbjct 1421 TTAAATAGGTACTCTCGTTGGTCATTATCTGTAATGTAGGTATCAATCAAAATGCTGTAC 1362 Query 39423 ATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAA 39482 |||||||| || || |||||| ||||||||||| ||| || | || || | | Sbjct 1361 ATTTCAGAGTGAACGTTTTCCATGGCTATTTGAAAACCATAGAAACAACGAGCCTCAGTA 1302 Query 39483 TACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCT 39542 |||||||| |||| |||||||| | ||| ||| || ||||| || || || Sbjct 1301 ACTTGAACTTCCTGGGAGAAGCGTTCAACCAGATTTTCATTGACTATACCGTCGGAAGCA 1242 Query 39543 GCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAA 39602 || || || || ||||||| | ||||||||| |||||| || | | | | |||| Sbjct 1241 GCAAAAAAGGCCAAAACATGTGAAATAAAATGACGTTCATTGTCGGTAAGTCTATTCCAA 1182 Query 39603 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 | ||| || | ||| |||||||||| ||||||||||| ||| Sbjct 1181 TCGGACATATCAGAAGAGAGATCCACTTCTTCTACAGTCCAAAAAGAGGCT 1131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903050261172600