Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq47065 150 1e-31 seq175855 147 2e-30 seq7894 147 2e-30 seq182395 86.0 5e-12 >seq47065 Length=7920 Score = 150 bits (166), Expect = 1e-31 Identities = 162/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 ||| ||||| | || ||||| ||||| ||||| ||||| | | ||| || ||| || Sbjct 2864 CACTAAATGCAAAGTTGATTCCTTTTGGATGTTGTAATCGGATAGGGTACGTCCATCTTC 2805 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | |||||| |||||| | || | | ||||||||| || ||||| ||||||||||| || Sbjct 2804 CAATTGTTTTCCAGCAAAAATTAGACGTTGCTGATCTGGTGGAATTCCCTCTTTGTCCTG 2745 Query 29697 TAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 ||| || | ||||||| |||| | ||| |||||| |||| || ||||| || || || | Sbjct 2744 -AATCTTGGCTTTGACATTTTCGATAGTATCAGAAGGTTCGACCTCAAGTGTAATGGTCT 2686 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| |||| ||| || ||||| ||||||||| Sbjct 2685 TGCCCGTTAGGGTCTTTACAAAAATCTGCATT 2654 >seq175855 Length=19510 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | |||||||| ||||| ||||| || || | | ||||||| Sbjct 16642 ACGGAGAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACC 16583 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || ||||| | ||||| | ||| ||||| || || ||||| ||||| Sbjct 16582 ATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTT 16523 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| |||||| |||| | |||||| ||| | || ||||| | || || Sbjct 16522 GTCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAGGTGAT 16463 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||||| ||||| || || |||||||| Sbjct 16462 GGTTTTACCAGTTAGAGTTTTGACGAAGATCTGCAT 16427 >seq7894 Length=2644 Score = 147 bits (162), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || ||||| |||||||| |||||||| | | ||||| Sbjct 2298 ACGTAGAACCAAATGAAGTGTTGATTCCTTTTGAATATTATAATCGGACAAAGTGCGTCC 2239 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||||||||| ||| | || || | ||| ||||| || || |||||||| || Sbjct 2238 GTCTTCCAATTGTTTGCCGGCAAAAATTAAACGTTGTTGATCTGGGGGGATACCCTCCTT 2179 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | ||||| | || | ||| |||||| |||| || || | || | Sbjct 2178 ATCTTG-AATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACCTCTAAGGTGA 2120 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || ||||||||||| || || || || ||||||||||| Sbjct 2119 TGGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCATTTT 2080 Score = 138 bits (152), Expect = 9e-28 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || | |||||||| |||||||| | || |||||||||||||| || ||||| | | Sbjct 2537 CCACCACGCAAACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCAGAC 2478 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| || || | |||||||||||| | || || | ||| ||||| || || Sbjct 2477 AATG-TGCGCCCGTCTTCCAATTGTTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGG 2419 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || |||||||| |||||| | ||| ||| |||| | ||| || ||| | || | Sbjct 2418 GATTCCTTCCTTGTCTTG-AATTTTAGCTTTAACATTTTCAATAGTATCGGAAGGCTCAA 2360 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | ||| || ||||||||||| | || || ||||| || ||||| Sbjct 2359 CCTCTAAAGTGATGGTTTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 2311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 29681 TACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 |||| || || ||||| | ||| || ||| |||| | ||| || ||| |||| |||| Sbjct 2644 TACCTTCCTTATCTTGGATTTTAGCCTTAACATTTTCAATAGTATCGGAAGGTTCAACTT 2585 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| ||||| || ||||| |||||||||||||| ||||| Sbjct 2584 CTAGTGTTATTGTTTTTCCCGTTAATGTTTTAACAAATATTTGCAT 2539 >seq182395 Length=1815 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/178 (71%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 89700 AAACGGCTCGGTTGCGCACTTTTGAACGCAACTGGCCTTGCGCTTTGAAACAAAAACCTG 89759 |||| ||||| ||||| | |||| | || |||||| | || ||||||| | ||| | Sbjct 1023 AAACCGCTCGTTTGCGTTCGTTTG--CTGAA-TGGCCTAGAACTATGAAACAGAGACCAG 967 Query 89760 AGCAGTTGGCGGATGCCGGttttttttACACGGGCCAAGGCGACAAGACGATTTGTTTCT 89819 |||||| || || ||||| || ||||| ||||| ||||| | | |||||| Sbjct 966 CGCAGTTAGCCGAGGCCGGCTTCTTTTATACGGGTACTGGCGATCGGGTAAAGTGTTTCA 907 Query 89820 TTTGCAACGGGGGCCTTAAGGATTGGGAAGATGGCGATGAACCTTGGGAACAACATGC 89877 ||| || || || || || ||||| || | ||||||||||||||||||||||| Sbjct 906 GTTGTGGTGGAGGTCTAAAAGACTGGGATGAGGATGATGAACCTTGGGAACAACATGC 849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384353716827927