Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq40655 113 1e-19 seq74093 102 2e-16 seq178404 98.7 2e-15 seq99149 87.8 4e-12 seq44910 87.8 4e-12 >seq40655 Length=7952 Score = 113 bits (124), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| ||| |||| ||| | |||||| | ||||| || ||||||||||| Sbjct 5157 AGACATTTATGTGATGGTGATATTGTTTTATTCAATCGCCAACCTTCTTTGCATAAAATG 5098 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 || || ||| ||| ||| || ||| | | | || ||||| || |||| | || Sbjct 5097 TCCATTATGTGCCATCAAGCTAAGGTACAACCGCAAAGAACTTTTCGTTTTAATGAATGT 5038 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| ||||| ||||| ||||||||||| |||||||||||| | ||| |||| ||| Sbjct 5037 GCTTGTACTCCTTACAATGCTGATTTTGATGGTGATGAAATGAATTTACATTTACCGCAA 4978 >seq74093 Length=5834 Score = 102 bits (112), Expect = 2e-16 Identities = 215/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 ||||||||| |||||||||||||||||| || |||| | |||| |||||| | Sbjct 1516 GCTTTTGCTGCTGTTGAAGGTATATTCTTCAGTGGAAGTTTCGCTTCTATATTTTGGTTG 1575 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 ||||| ||||| | ||||| || || |||| || ||| |||| ||||| | ||||| Sbjct 1576 AAGAAACGTGGTCTTATGCCCGGTCTTACATTCTCTAATGAATTGATCTCTCGTGATGAG 1635 Query 131987 GCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAA 132046 | || || ||| ||||| | ||||| | | || ||||| || || | | | | Sbjct 1636 GGCTTACACTGTGATTTTGCAGTGTTAATGT-TCAAACATTTGGTG-CAACGTCCAAGCA 1693 Query 132047 A--ATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAG 132104 | | | |||| || |||| || || ||| | || || | ||||| | || | Sbjct 1694 AGGAGAGGATTATTGAAATTATTTCAGAGGCTGTTAAAATTGAACAAGAGTTCTTAACTG 1753 Query 132105 AAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAAT 132164 | || ||||| |||| ||||| |||||| || | ||| || || ||||||| Sbjct 1754 ATGCCCTGCCTGTTGATTTAATTGGCATGAATTGTGGATTAATGTCCGAATATATTGAAT 1813 Query 132165 TCGTTGCTGATCGTTTA 132181 | ||||||||||| ||| Sbjct 1814 TTGTTGCTGATCGCTTA 1830 >seq178404 Length=1043 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC--AGGCAT 304943 ||||| | |||| |||| ||||| |||| ||||| || |||| || || ||| | Sbjct 377 TTACAGTTTCATGTTGCCACATTGGTGGACAATGATATGCCTGGCAT---GCCAAGGGCT 433 Query 304944 CT-CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGT 305002 | |||| || || | ||||||||| | || | ||| | ||||| ||||| ||| Sbjct 434 ATGCAAAAGTCAGGTAAACCTTTAAAAGCGATAAAAGCACGTCTAAAAGGCAAAGAAGGT 493 Query 305003 CGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACA 305062 |||||||| |||||| | ||||| |||||||| ||||| |||| | | ||| || ||| Sbjct 494 CGTATTCGTGGTAATTTGATGGGTAAACGTGTGGATTTCTCTGCACGTACTGTCATTACA 553 Query 305063 CCTGAT 305068 |||||| Sbjct 554 CCTGAT 559 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||||| || |||||| |||| | |||||| | || || | |||| |||||| | Sbjct 794 CATTTGCGCGATGATGATTTGGTTATTTTCAATCGTCAGCCCACTTTGCACAAAATGAGT 853 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| |||| || ||||| ||| | | | ||||| || | ||| | || | Sbjct 854 ATGATGGGTCATCGTGTTAAAGTTTTACCCTGGTCTACATTCCGTATGAATTT--GT-CG 910 Query 305429 TGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| || |||||||| ||||||||||| || ||||||||| | ||||| || ||| Sbjct 911 TGTACCTCACCCTATAATGCTGATTTTGATGGTGACGAAATGAATTTACATGTGCCCCAA 970 Query 305486 TC 305487 || Sbjct 971 TC 972 >seq99149 Length=5569 Score = 87.8 bits (96), Expect = 4e-12 Identities = 85/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 167248 CACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTA 167306 |||| ||||| || ||||| | | || || ||||||||||| |||| ||||| | || | Sbjct 1294 CACCCGCATTGTCAAATTC-TCCACAATAGTTTGGTGCTGAGAATAGTGTAACGAGTTGA 1352 Query 167307 CGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 || || ||| |||||||| |||||||||||||||| ||| ||||| Sbjct 1353 CGCTTCGCAAAAAATTCATATCCATCTTCAACAACTTGATGAGCACG 1399 >seq44910 Length=2188 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAA 167298 |||| | ||||||||||||||| |||||| |||||| || ||||| |||| ||| | Sbjct 353 TCATCATACCACCAGCATTATCAAATTCACCACAATAATTGGGAGCTGAGAATAAAGTCA 412 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAAC 167341 | |||| ||| | ||| |||||||||||||||||||| || Sbjct 413 CCAATTGACGGCGGGCAAAGAATTCATAACCATCTTCAACGAC 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184009612328467