Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq47065 122 6e-23 seq7894 113 3e-20 seq175855 107 1e-18 >seq47065 Length=7920 Score = 122 bits (134), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| || || || || || || |||||| |||| |||||| | Sbjct 2654 AATGCAGATTTTTGTAAAGACCCTAACGGGCAAGACCATTACACTTGAGGTCGAACCTTC 2713 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| |||||| || || |||||||| || |||| || Sbjct 2714 TGATACTATCGAAAAT--GTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGAT 2771 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| |||||||||| |||||||||||||| || | ||| | | | ||||||||| Sbjct 2772 CAGCAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGACGTACCCTATCCGATTAC 2831 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||||||||||| || || || | ||||| || Sbjct 2832 AACATCCAAAAGGAATCAACTTTGCATTTAGTGTTACGCCTCCGTGGTGG 2881 >seq7894 Length=2644 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| ||| || || | || || || || Sbjct 2311 ATGCAAATCTTTGTCAAGACACTGACTGGCAAAACCATCACTTTAGAGGTTGAGCCTTCC 2370 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| ||||| ||||| | || || | Sbjct 2371 GATACTATTGAAAAT--GTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCAGATC 2428 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| ||||| || || || ||||||||||| |||| |||| ||||| ||||||| Sbjct 2429 AACAACGTTTAATCTTCGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACA 2488 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | || |||||||| || ||||||||||| |||||||||||||| ||| Sbjct 2489 ATATTCAAAAAGAATCTACATTGCATTTGGTATTGCGTTTGCGTGGTGGC 2538 Score = 100 bits (110), Expect = 2e-16 Identities = 93/116 (80%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| |||||||||||||| ||||||||||| |||| ||||| ||||||||| Sbjct 2197 GATCAACAACGTTTAATTTTTGCCGGCAAACAATTGGAAGACGGACGCACTTTGTCCGAT 2256 Query 27964 TACAACATCCAAAAAGA--GAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || || || ||||| || | ||||| ||||||||| | ||| | ||||| ||| Sbjct 2257 TATAATATTCAAAAGGAATCAACACTT--CATTTGGTTCTACGTCTTCGTGGTGGC 2310 >seq175855 Length=19510 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || |||||||| ||||| ||| || || | || || || || Sbjct 16427 ATGCAGATCTTCGTCAAAACTCTAACTGGTAAAACCATCACCTTGGAAGTTGAGCCTTCC 16486 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || ||||| ||||| |||||||||||| | || || || Sbjct 16487 GACACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 16546 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || || || || |||||||| || | |||| ||||||||| |||||| Sbjct 16547 CAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 16606 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || |||||| ||||||||| | ||| | ||||| || Sbjct 16607 ATCCAAAAGGAATCCACTTTACATTTGGTTCTCCGTCTTCGTGGTGG 16653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355062873603669