Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neobellieria_20bullata_20[genbank_20GCA_5F001017455.1_202015-06-01] 184,347 sequences; 396,224,597 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq47065 147 5e-30 seq7894 127 5e-24 seq175855 116 9e-21 seq55885 111 4e-19 >seq47065 Length=7920 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || || || || || || ||||| ||| || || Sbjct 2658 CAGATTTTTGTAAAGACCCTAACGGGCAAGACCATTACACTTGAGGTCGAACCTTCTGAT 2717 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||||||||||||||| ||||| || || || |||||| Sbjct 2718 ACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGATCAGCAA 2777 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || |||||||| | ||||||||| | || || ||||||| ||| || Sbjct 2778 CGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGACGTACCCTATCCGATTACAACATC 2837 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||| |||||||| ||||| | || || Sbjct 2838 CAAAAGGAATCAACTTTGCATTTAGTGTT 2866 >seq7894 Length=2644 Score = 127 bits (140), Expect = 5e-24 Identities = 158/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| ||| | || || || || |||||| | ||||| ||| Sbjct 2080 AAAATGC---AGATCTTCGTGAAGACTTTAACTGGCAAGACCATCACCTTAGAGGTCGAA 2136 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || ||||||||||| || ||||| || || || || ||||| || Sbjct 2137 CCTTCTGATACTATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGTATCCCCCCA 2196 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || || ||||| ||||| | ||||| ||| | ||| | ||||| Sbjct 2197 GATCAACAACGTTTAATTTTTGCCGGCAAACAATTGGAAGACGGACGCACTTTGTCCGAT 2256 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| | ||||| ||||||||||| ||| | ||| Sbjct 2257 TATAATATTCAAAAGGAATCAACACTTCATTTGGTT 2292 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || ||||| ||||| | ||||| || || || Sbjct 2314 CAAATCTTTGTCAAGACACTGACTGGCAAAACCATCACTTTAGAGGTTGAGCCTTCCGAT 2373 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| ||||| |||||||||||||| || || ||| Sbjct 2374 ACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAACAA 2433 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | ||||| || | || | | ||||| || | Sbjct 2434 CGTTTAATCTTCGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAATATT 2493 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||| ||| ||||| | || ||| Sbjct 2494 CAAAAAGAATCTACATTGCATTTGGTATTG 2523 >seq175855 Length=19510 Score = 116 bits (128), Expect = 9e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||||| || || ||||| |||||| | || || || || ||| Sbjct 16430 CAGATCTTCGTCAAAACTCTAACTGGTAAAACCATCACCTTGGAAGTTGAGCCTTCCGAC 16489 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || || || ||||||||||| ||||| || || || ||| Sbjct 16490 ACTATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAACAA 16549 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| || || || | |||||||| | || |||| |||| || ||| | Sbjct 16550 CGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGTCGCAC-CTTGTCCGACTACAACAT 16608 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 |||||| ||||| || | ||| | ||| Sbjct 16609 CCAAAAGGAATCCACTTTACATTTGGTT 16636 >seq55885 Length=1496 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || |||||||| |||||| | || |||||| || || Sbjct 153 CAGATTTTCGTCAAGACCTTGACTGGAAAAACCATCACCTTGGAAGTGGAACCTTCTGAT 212 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||||||||| || ||||| || || || || || || Sbjct 213 ACTATTGAGAATGTAAAGGCCAAGATTCAGGATAAGGAAGGTATTCCCCCAGATCAACAG 272 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| ||||| | |||||||| | ||| | | || ||||| | Sbjct 273 CGTTTAATTTTCGCCGGTAAACAATTGGAAGATGGCCGCACTTTGTCGGACTATAATATT 332 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 || || ||||| ||||| ||| | || || Sbjct 333 CAGAAGGAATCTACACTCCATTTGGTGTT 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200888051982318