Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3919 91.5 2e-13 >seq3919 Length=163912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || ||||| || |||||| || || || | || ||||||||||| ||| Sbjct 143227 ATGTAAGTGTCTATGAGCAGCGAGTACATCTCTGAATGAACATTTTCCATGGCTATTTGA 143286 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||||||||| | |||||| | || ||||| | ||| || || ||||| Sbjct 143287 AAGCCGTAAAAGCACCTGGCTTCTGTTACAGTCACTTCTTGGCTGAAACGCTCGACTAGA 143346 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 |||||||| ||||| || || || |||||||| |||| | ||| ||||||| Sbjct 143347 TTTTCGTTGACGATTCCATCCGATGCCGCGAAAAATGCCAGGACATGAGATATGAAAT 143404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837 || |||||| ||| | ||| || || || ||||| || || | ||||| | | |||| Sbjct 141910 CCGAGTTCGACGAGGAGTCTGTCAGCGACGAATTCGATGTAGCGACACATGAGCTTGCAG 141969 Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897 |||||||| | | | || ||||| || || ||||| ||| || || |||||||| Sbjct 141970 TTCATTCCCAGCATAGCGACGGGAAGGGCGTCAGTCAAGAATTCCTGTTCGATAACAACG 142029 Query 16898 GCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 || || | || || || ||||||| | ||| ||| | || | |||| ||| Sbjct 142030 GCGTCTCTGATGATGGAAGTGACTCGTTGTTGGGAGGGTTTTTGGACGATGTGTTGGAAC 142089 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCT 16988 || ||||| || || |||||||| ||||||| Sbjct 142090 ATGAGACAAGCAAAGTCGCAATGCAATCCCT 142120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517516339265640