Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq3112 96.9 3e-15 >seq3112 Length=543522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 179/260 (69%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 18872 AGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAAC-CCAGAAAGCCGAC 18930 |||||| ||||| ||| || |||| | || | |||| ||||| | ||||| | | | Sbjct 484460 AGGAATTGATCAACTGAAAGATGTTGTGGAAA-AATTGAAACATTCACCAGATGACAGGC 484402 Query 18931 GAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTC 18990 |||| || || | | ||||||||| ||||||||| |||||| |||| || || | Sbjct 484401 GAATCATAATGTGTGCCTGGAATCCAGTGGATATCCCAATAATGGCTTTACCACCTTGCC 484342 Query 18991 ACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGAT 19050 | | |||||| ||||| | || || |||||||| || | | |||||| | Sbjct 484341 ATTGTCTGGTTCAGTTGTACGTGTCTAATGGCGAATTATCGTGTTTATTGTACCAGCGGA 484282 Query 19051 CGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACA 19110 ||||||||||| || || | || || |||||||| | ||| | || || || || | Sbjct 484281 GCGGGGATATGGGTCTGGGTATTCCCTTTAACATTGCCAGTTATTCTCTACTCACTTATA 484222 Query 19111 TAGTAGCGCATGTTACAGGA 19130 | | || ||||| |||||| Sbjct 484221 TGTTGGCCCATGTCACAGGA 484202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399481977716535