Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq3112 96.9 3e-15
>seq3112
Length=543522
Score = 96.9 bits (106), Expect = 3e-15
Identities = 179/260 (69%), Gaps = 2/260 (1%)
Strand=Plus/Minus
Query 18872 AGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAAC-CCAGAAAGCCGAC 18930
|||||| ||||| ||| || |||| | || | |||| ||||| | ||||| | | |
Sbjct 484460 AGGAATTGATCAACTGAAAGATGTTGTGGAAA-AATTGAAACATTCACCAGATGACAGGC 484402
Query 18931 GAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTC 18990
|||| || || | | ||||||||| ||||||||| |||||| |||| || || |
Sbjct 484401 GAATCATAATGTGTGCCTGGAATCCAGTGGATATCCCAATAATGGCTTTACCACCTTGCC 484342
Query 18991 ACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGAT 19050
| | |||||| ||||| | || || |||||||| || | | |||||| |
Sbjct 484341 ATTGTCTGGTTCAGTTGTACGTGTCTAATGGCGAATTATCGTGTTTATTGTACCAGCGGA 484282
Query 19051 CGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACA 19110
||||||||||| || || | || || |||||||| | ||| | || || || || |
Sbjct 484281 GCGGGGATATGGGTCTGGGTATTCCCTTTAACATTGCCAGTTATTCTCTACTCACTTATA 484222
Query 19111 TAGTAGCGCATGTTACAGGA 19130
| | || ||||| ||||||
Sbjct 484221 TGTTGGCCCATGTCACAGGA 484202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399481977716535
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |