Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3112 140 2e-28 >seq3112 Length=543522 Score = 140 bits (154), Expect = 2e-28 Identities = 189/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 102005 CCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGA 102064 |||| |||| ||||||| | | |||| ||||| || || ||||| ||||||||| Sbjct 484731 CCTTTTCCTGTATAATCTGTATGCATATCTTTGTATTCAGCACCAAAATGTCTCCACTGA 484790 Query 102065 AATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAA 102124 || || || || || |||||||| ||||| ||||| ||| |||||| | ||||| Sbjct 484791 AAGCCGTAGACTGGCCCAAGATCGCCTTCTTCTCTATCAGTAAAACCGCAGCTGTCTAAG 484850 Query 102125 AATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCT-GATAGCTCTTTGCT 102183 ||||||| ||| | || || | |||||| | || || || || || || ||| || Sbjct 484851 AATGATCGAGAACTGTTGGCGTTCCAAATTTTTACACC-TCTACTCGAGAGATCTCTGGC 484909 Query 102184 GTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCT 102243 ||| || |||||||| || ||||| | |||||||| ||||| || | ||| || || | Sbjct 484910 GTCCGTTGATCCTCTAATGAACCATAGAAGTTCTTCGACAACGCCACGCCAGAAGACACA 484969 Query 102244 CTTAGTAGTTAAAAGTGGAAA 102264 || ||||| || |||||||| Sbjct 484970 TTTTGTAGTCAAGAGTGGAAA 484990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361231286366273