Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 174 2e-38
seq3919 116 4e-21
>seq4498
Length=49303
Score = 174 bits (192), Expect = 2e-38
Identities = 240/335 (72%), Gaps = 3/335 (1%)
Strand=Plus/Plus
Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609
|||| || |||||||||||| ||||||| |||||||||| ||||| ||||| || || |
Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844
Query 53610 TATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 53669
|||| |||||||| || ||||| | | | | |||| || ||||| ||||| ||
Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904
Query 53670 AATCAAAT---TGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAA 53726
|||| || | | | | ||||||||||| | ||||| ||||| ||||||||||
Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964
Query 53727 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 53786
| || || || | || | ||||| ||| || ||||||||||||||||| || ||||
Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024
Query 53787 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 53846
| || || | || |||||||| || || || ||| || || || ||| |||
Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTATG 42084
Query 53847 GCGTACCAGTTTCAATCTGGGATTCTATAATCGCT 53881
| || |||||||||| ||| || | || || |||
Sbjct 42085 GTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119
Score = 116 bits (128), Expect = 4e-21
Identities = 189/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 53057 TGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 53116
|||| ||| ||| || | |||||| ||||| || | |||| ||||| | | |
Sbjct 41112 TGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTA 41171
Query 53117 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 53176
| || | | || | || | ||| ||||| |||| ||||||||||||||| || ||||
Sbjct 41172 GCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGG 41231
Query 53177 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 53236
|| || |||| || |||||||| | ||| | || ||||| || || | |||||| ||
Sbjct 41232 CGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCT 41291
Query 53237 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 53296
|| |||||||||||||| || || | | || ||| | | |||| | | ||
Sbjct 41292 GTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATC 41351
Query 53297 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328
||| |||| |||| | |||| | |||||||||
Sbjct 41352 TTAGCTTTCAGAGCTGCCCAGTCCCAAAGATC 41383
Score = 114 bits (126), Expect = 2e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 54443 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAG 54502
|| |||||||| || ||||| ||||||| || | ||||||||| || || || |||
Sbjct 42945 GTGGGAGAAGCATGGGTAAAATATTTTTCTGACAATAGATTGTAGGTTTCAATTGCTCTA 43004
Query 54503 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562
|| ||||| | |||||| || || || |||||||| |||| || || ||||| ||
Sbjct 43005 TCAATATCTTCTCCATGAATACCCACAGCAACACGCATCAACAAATGTTGTGGTCTCTCT 43064
Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622
||| ||| || ||||||||||| || | |||| | ||||| || ||||| ||
Sbjct 43065 GCGACTTTGCCATTAATTTTCAGCAAATAACTTCTTTCGAGTGTTTTGAAGCCAAAGTAA 43124
Query 54623 TTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660
|| || ||| |||| || |||||||| | |||||
Sbjct 43125 TTATAACTAAAATCTCTGTCATAAATAATCGCAGAGTT 43162
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996
|||| ||||| |||||| || || |||||||||| |||||||||||||||| | |
Sbjct 42262 GTGTGTACAAAGCTTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCGTGAG 42321
Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056
||||||| | ||| || | ||| || ||||||||||| | |||||||||||
Sbjct 42322 GACACATGAGGCTCCAAACTTGTTTTTCCAAAACACGTTTCATAAACAAATCAGGAATCC 42381
Query 54057 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102
|||| || ||| | ||||| | || ||||| || |||||
Sbjct 42382 AAAGGGCGTAAAACATTTCTCTAGCTCGCATCTCCTCTTTGCCTGT 42427
>seq3919
Length=163912
Score = 116 bits (128), Expect = 4e-21
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678
|||| |||| ||| |||||||| |||||||||||||| || ||||||||||||||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 24738
|||| ||||| | ||||||| || || || || ||||| | ||||| | | ||| |
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683
Query 24739 TTGGTTCCA 24747
||||||||
Sbjct 143684 GTGGTTCCA 143692
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890
||| || ||| |||||||||||| || || || ||||| |||||||| ||||||||
Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522
Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATT 23923
|| ||||| ||||||||||||||| | |||||
Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555
Score = 86.0 bits (94), Expect = 7e-12
Identities = 153/223 (69%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
||||||| || ||| | |||||| || || || || ||||| | ||||||||||
Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| |||||||| || || |||| ||||| || ||||| ||||| |||||||
Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332
Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 24333
||| | || || || | || ||||| | |||||| || | ||||| | |
Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392
Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376
||||||| ||||| || | | || || ||||| || ||
Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACAG 142435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593688032465040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |