Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4498 174 2e-38 seq3919 116 4e-21 >seq4498 Length=49303 Score = 174 bits (192), Expect = 2e-38 Identities = 240/335 (72%), Gaps = 3/335 (1%) Strand=Plus/Plus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 |||| || |||||||||||| ||||||| |||||||||| ||||| ||||| || || | Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844 Query 53610 TATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 53669 |||| |||||||| || ||||| | | | | |||| || ||||| ||||| || Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904 Query 53670 AATCAAAT---TGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAA 53726 |||| || | | | | ||||||||||| | ||||| ||||| |||||||||| Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964 Query 53727 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 53786 | || || || | || | ||||| ||| || ||||||||||||||||| || |||| Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024 Query 53787 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 53846 | || || | || |||||||| || || || ||| || || || ||| ||| Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTATG 42084 Query 53847 GCGTACCAGTTTCAATCTGGGATTCTATAATCGCT 53881 | || |||||||||| ||| || | || || ||| Sbjct 42085 GTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119 Score = 116 bits (128), Expect = 4e-21 Identities = 189/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 53057 TGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 53116 |||| ||| ||| || | |||||| ||||| || | |||| ||||| | | | Sbjct 41112 TGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTA 41171 Query 53117 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 53176 | || | | || | || | ||| ||||| |||| ||||||||||||||| || |||| Sbjct 41172 GCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGG 41231 Query 53177 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 53236 || || |||| || |||||||| | ||| | || ||||| || || | |||||| || Sbjct 41232 CGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCT 41291 Query 53237 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 53296 || |||||||||||||| || || | | || ||| | | |||| | | || Sbjct 41292 GTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATC 41351 Query 53297 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328 ||| |||| |||| | |||| | ||||||||| Sbjct 41352 TTAGCTTTCAGAGCTGCCCAGTCCCAAAGATC 41383 Score = 114 bits (126), Expect = 2e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 54443 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAG 54502 || |||||||| || ||||| ||||||| || | ||||||||| || || || ||| Sbjct 42945 GTGGGAGAAGCATGGGTAAAATATTTTTCTGACAATAGATTGTAGGTTTCAATTGCTCTA 43004 Query 54503 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 || ||||| | |||||| || || || |||||||| |||| || || ||||| || Sbjct 43005 TCAATATCTTCTCCATGAATACCCACAGCAACACGCATCAACAAATGTTGTGGTCTCTCT 43064 Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622 ||| ||| || ||||||||||| || | |||| | ||||| || ||||| || Sbjct 43065 GCGACTTTGCCATTAATTTTCAGCAAATAACTTCTTTCGAGTGTTTTGAAGCCAAAGTAA 43124 Query 54623 TTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 || || ||| |||| || |||||||| | ||||| Sbjct 43125 TTATAACTAAAATCTCTGTCATAAATAATCGCAGAGTT 43162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996 |||| ||||| |||||| || || |||||||||| |||||||||||||||| | | Sbjct 42262 GTGTGTACAAAGCTTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCGTGAG 42321 Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 ||||||| | ||| || | ||| || ||||||||||| | ||||||||||| Sbjct 42322 GACACATGAGGCTCCAAACTTGTTTTTCCAAAACACGTTTCATAAACAAATCAGGAATCC 42381 Query 54057 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 |||| || ||| | ||||| | || ||||| || ||||| Sbjct 42382 AAAGGGCGTAAAACATTTCTCTAGCTCGCATCTCCTCTTTGCCTGT 42427 >seq3919 Length=163912 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 |||| |||| ||| |||||||| |||||||||||||| || ||||||||||||||||| | Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 24738 |||| ||||| | ||||||| || || || || ||||| | ||||| | | ||| | Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683 Query 24739 TTGGTTCCA 24747 |||||||| Sbjct 143684 GTGGTTCCA 143692 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| || ||| |||||||||||| || || || ||||| |||||||| |||||||| Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATT 23923 || ||||| ||||||||||||||| | ||||| Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555 Score = 86.0 bits (94), Expect = 7e-12 Identities = 153/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||| || ||| | |||||| || || || || ||||| | |||||||||| Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| |||||||| || || |||| ||||| || ||||| ||||| ||||||| Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 24333 ||| | || || || | || ||||| | |||||| || | ||||| | | Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 ||||||| ||||| || | | || || ||||| || || Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACAG 142435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593688032465040