Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3846 116 3e-21 >seq3846 Length=171336 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||||||||||||||| |||||||| | Sbjct 15200 CCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAA 15259 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || ||||||||||| || ||| |||| | |||||||||||| || Sbjct 15260 AGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGG 15319 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| || ||| |||||| | | | |||||| | ||| | Sbjct 15320 ATTCCCTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGACT 15379 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| ||||| || || | ||||||||||| |||||||| Sbjct 15380 TCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||||||| | |||| ||| || || || |||||||||||||| ||||| | | Sbjct 15428 CCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGAC 15487 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | |||| | | || || ||||| || || ||| | || |||| ||| ||||| || Sbjct 15488 AAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGA 15547 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| ||| ||| ||| || | | | || || || ||| | Sbjct 15548 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACT 15607 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||||||| ||||| || | || || ||||| |||||||| Sbjct 15608 TCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || |||| || |||| ||| | ||| |||||||| |||||||| ||||| | Sbjct 14971 TCCACCACGGAGCCGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGA 15030 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||||| | | || ||||||||||| || || | || | ||||||||||| || Sbjct 15031 AAGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGG 15090 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||| ||||| ||| || || || | | | || ||| | ||| Sbjct 15091 AATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAAC 15150 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || || |||||||| || ||||||||||| || ||||| Sbjct 15151 CTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | ||| || ||||| || |||||||| || | || || || | ||| Sbjct 16583 AGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCC 16642 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || ||| | || | |||||||||||| || | || || ||||| Sbjct 16643 TCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCC 16702 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| |||||| | | | || ||| | ||| ||| | ||| ||||| Sbjct 16703 TGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTT 16762 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||||| || || || || || ||||| Sbjct 16763 TTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| |||||||| |||||||| || | ||||| || | || || |||||||| || Sbjct 16826 GTGGATTCCTTTTGGATGTTATAATCGGAAAGGGTGCGGCCATCTTCGAGCTGTTTTCCT 16885 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||||||| || | || || ||||| ||||| ||| Sbjct 16886 GCAAAGATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCCTTC 16945 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| |||||| | || ||| | ||| |||||||| || || || || Sbjct 16946 ACATTTTCGATCGTATCAGATGCTTCAACTTCGAGGGTGATGGTCTTCCCCGTCAAGGTC 17005 Query 21159 TTGACAAATATTTGCATTTT 21178 |||||||| || ||||| || Sbjct 17006 TTGACAAAAATCTGCATGTT 17025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422235923357468