Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3919 134 1e-26 seq4480 132 5e-26 seq2212 132 5e-26 seq3846 116 4e-21 >seq3919 Length=163912 Score = 134 bits (148), Expect = 1e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || ||||| || | | || || ||| ||||||| | ||||||||| || Sbjct 142434 TGTTCAATGCCATTGAAAACCTTCCCTGTGTCGCTAAGAAGGCAAACTGGGCGCTGAACT 142375 Query 117006 GGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||| | | || || || |||||| ||||| | || ||||| || || ||||| Sbjct 142374 GGATAAACAAC-GACAGTGCAAACTTCGGTGAGCGAGTCGTTGCCTTTGCAGCAGTCGAA 142316 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || ||||||| || ||||||||| ||||||| |||||||| || || || | ||| Sbjct 142315 GGGATCTTCTTCAGTGGAAGTTTCGCCTCCATATTCTGGCTCAAAAAGCGTGGATTGATG 142256 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || || ||||| ||||||||||||||||| ||||||||||||| Sbjct 142255 CCAGGTCTGACCTTCAGCAACGAGCTCATTTCCAGGGACGAGG 142213 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 116700 AGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGC 116759 |||||| || |||||| | | || |||| ||||| |||||||| || || | Sbjct 143446 AGGACATGACGGACTGGAATGATCTAAAGGACAGTGAGCGTCATTTCATATCTCATGTCC 143387 Query 116760 TGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTC 116819 |||| |||||||| || || || ||||||||||| ||||| |||||||||||| | Sbjct 143386 TGGCATTTTTCGCGGCATCGGATGGAATCGTCAACGAAAATCTAGTCGAGCGTTTCAGCC 143327 Query 116820 AGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACG 116879 | || ||| || | || || ||||||| ||||||||||| || |||||||| || | Sbjct 143326 AAGAAGTGACTGTAACAGAAGCCAGGTGCTTTTACGGCTTTCAAATAGCCATGGAAAATG 143267 Query 116880 TGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 | || || || ||||| ||| ||||| ||||| ||| Sbjct 143266 TTCATTCAGAGATGTACTCGCTGCTCATAGACACTTAC 143229 >seq4480 Length=409792 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| || || |||||||| |||||||| | || || || || | Sbjct 402673 AATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTC 402732 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | ||| |||||| ||||| | ||||||||||| ||||| | ||||| Sbjct 402733 CGATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCA 402792 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| || |||||||| || || || | || || || |||||||| Sbjct 402793 GCAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAA 402852 Query 40869 CATCCAGAAGG 40879 ||||||||||| Sbjct 402853 CATCCAGAAGG 402863 >seq2212 Length=252600 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| || || |||||||| |||||||| | || || || || | Sbjct 250479 AATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTC 250420 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | ||| |||||| ||||| | ||||||||||| ||||| | ||||| Sbjct 250419 CGATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCA 250360 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| || |||||||| || || || | || || || |||||||| Sbjct 250359 GCAGCGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAA 250300 Query 40869 CATCCAGAAGG 40879 ||||||||||| Sbjct 250299 CATCCAGAAGG 250289 >seq3846 Length=171336 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || ||||| |||||||||||||| | || || || ||| | Sbjct 16111 AATGCAAATTTTCGTTAAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTC 16052 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | ||| | |||| ||||||| ||||| ||||| || || | ||||| Sbjct 16051 CGACACTATTGAAAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCA 15992 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||| ||||| || |||| || ||| | |||||||| Sbjct 15991 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCAGACTACAA 15932 Query 40869 CATCCAGAAGGA 40880 |||||||| || Sbjct 15931 TATCCAGAAAGA 15920 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || | ||||| || ||||||||| |||| || ||||| Sbjct 17026 AAACATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACCATCACCCTCGAAGTTGAAGC 16967 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | ||| | |||| || |||| ||||||||||| || || | || Sbjct 16966 ATCTGATACGATCGAAAATGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGA 16907 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || | |||| || || |||||||| || || | |||||||| ||| || Sbjct 16906 CCAGCAGAGATTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTA 16847 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||||| |||| || |||||||| Sbjct 16846 TAACATCCAAAAGGAATCCACCCTCCATCTAGT 16814 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || |||||||| |||||| | || || || || | Sbjct 15198 ATGCAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCT 15139 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| ||||| | |||||||| || || || | |||||| Sbjct 15138 GACACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 15079 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | || | ||| || ||||||||||| || | ||| ||||| ||||||||| Sbjct 15078 CAGAGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAAC 15019 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| | || || ||||| || Sbjct 15018 ATTCAGAAGGAGTCTACTCTTCATCTGGT 14990 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||||||||| ||| | || ||||| ||| || Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | |||||| | |||||||| ||||| || | ||||| Sbjct 15594 GACACAATTGAGAACG-TAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCA 15536 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||||||||| || || || ||||| || || | || ||| | |||||||| Sbjct 15535 ACAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGTCTGACTACAA 15476 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 ||| || ||||| | || | ||||| || || Sbjct 15475 CATTCAAAAGGAATCAACCTTACATCTGGTTTT 15443 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||||||||||||| | || || || || | Sbjct 16794 ATGCAGATCTTCGTGAAGACCTTAACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCT 16735 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| | | || | ||| || | ||||||||||| ||||| | ||||| Sbjct 16734 GACACGATTGAAAATG-TGAAAGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCA 16676 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || |||||||| || || | ||||| || ||| || || Sbjct 16675 GCAGAGATTAATCTTTGCCGGAAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAA 16616 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 16615 CATCCAGAAGGAATCTACTCTTCATCTGGT 16586 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || |||||||||||||| | || ||||| ||| || Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| ||| |||| ||||||||||| || || | || ||| Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 16219 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | ||| ||||| ||||| || |||| || || | |||||||| Sbjct 16218 CAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAAT 16159 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || |||| | ||| |||| | || |||| || || Sbjct 16158 ATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGG 16112 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || || || || || | || ||||| || | Sbjct 15426 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCT 15367 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| | || | |||||||| ||||| ||||| ||||| | ||||| Sbjct 15366 GATACAATAGAGAACG-TGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCA 15308 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | || || ||||||||||| || | ||| || || |||||| || Sbjct 15307 GCAGAGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAA 15248 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || |||||| |||| || |||||||| Sbjct 15247 TATTCAAAAGGAGTCCACCCTTCATCTAGT 15218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || |||||||| || ||| | || || || || | Sbjct 16566 ATGCAGATCTTCGTCAAGACCTTAACTGGCAAAACTATTACCCTTGAAGTAGAGGCTTCG 16507 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | |||| ||||||| ||||| ||||| ||||| | ||||| Sbjct 16506 GACACAATTGAAAACG-TGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCAGACCA 16448 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || ||||||||||| || || | || || || || ||||| Sbjct 16447 GCAGAGGTTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACGCTTTCTGATTACAA 16388 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| || | || || ||||| || Sbjct 16387 CATCCAGAAAGAATCAACTCTTCATCTTGT 16358 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || || || ||||| | || || || || | Sbjct 15882 ATGCAAATTTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCG 15823 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||||| ||||||||||| || || | |||||| Sbjct 15822 GACACTATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAG 15763 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || ||||| || || || | ||||| || ||||||||| Sbjct 15762 CAGCGTTTGATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAAC 15703 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || |||| ||||| || || Sbjct 15702 ATCCAAAAAGAATCCACCCTGCACCTTGT 15674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515190070794480