Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3112 107 1e-18 >seq3112 Length=543522 Score = 107 bits (118), Expect = 1e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||| || |||||||| ||||| || || || || || || ||||| || ||||||||| Sbjct 484764 TATTCAGCACCAAAATGTCTCCACTGAAAGCCGTAGACTGGCCCAAGATCGCCTTCTTCT 484823 Query 97462 CTATCACAGAAACC-AAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTG 97520 |||||| ||||| ||| | ||||| | || | ||| | || || | |||||| | Sbjct 484824 CTATCAGTAAAACCGCAGC-TGTCTAAGAATGATCGAGAACTGTTGGCGTTCCAAATTTT 484882 Query 97521 CACACCAGATGCT-GCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATT 97579 ||||| | || | || ||| || ||| || |||||||| || ||||| | | || Sbjct 484883 TACACC-TCTACTCGAGAGATCTCTGGCGTCCGTTGATCCTCTAATGAACCATAGAAGTT 484941 Query 97580 CTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAA 97629 |||| ||||| || | ||| || || | || || || ||||| |||||| Sbjct 484942 CTTCGACAACGCCACGCCAGAAGACACATTTTGTAGTCAAGAGTGGAAAA 484991 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| | |||| |||| | ||||||||| || ||||||||||| || | || Sbjct 484206 GTGACATGGGCCAACATATAAGTGAGTAGAGAATAACTGGCAATGTTAAAGGGAATACCC 484265 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || |||||||| | | || || || ||| || | | |||| | |||| || Sbjct 484266 AGACCCATATCCCCGCTCCGCTGGTACAATAAACACGATAATTCGCCATTAGACACGTAC 484325 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAA 97296 |||||| || ||| || || || || |||||| |||| | ||| | |||||| Sbjct 484326 AACTGAACCAGACAATGGCAAGGTGGTAAAGCCATTATTGGGATATCCACTGGATTCCAG 484385 Query 97297 GCACACATCAACATTC 97312 |||||||| | |||| Sbjct 484386 GCACACATTATGATTC 484401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346764883857110