Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3846 125 6e-24 >seq3846 Length=171336 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | || || |||| || | || || || |||||||||||||| || Sbjct 15426 TACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAG 15485 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || ||||| |||||||| ||||||| ||||| || || || | Sbjct 15486 ACAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTG 15545 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| || |||||| |||||| ||| || | || | ||||| | | ||||| Sbjct 15546 GAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGA 15605 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | |||||||| || ||||| || |||||||| ||||| Sbjct 15606 CTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| |||||||| || || ||| | ||| ||| ||| || |||||||||||| Sbjct 15230 GTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTCCAGCTGTTTTCCA 15289 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | | |||||| || || || || |||||||||||| ||||||| ||| Sbjct 15290 GCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTTGCTTTC 15349 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | || || | ||| |||||| || | || | || || || || ||||| Sbjct 15350 ACGTTCTCTATTGTATCAGATGC-CTCGACTTCCAAAGTAATTGTCTTTCCAGTAAGAGT 15408 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| |||||||| ||||| Sbjct 15409 TTTGACAAAAATTTGCAT 15426 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || |||| || | |||||||| | ||||| ||||| || || ||||| || | Sbjct 15884 CCACCACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTC--TG 15941 Query 118572 ATAGTGCGCGTA--TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| | ||| || || ||||| || ||||| |||| | ||||||||| || |||| Sbjct 15942 ATAAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 16001 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| |||||| || || | ||| | ||||| | | ||| | Sbjct 16002 GAATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAA 16061 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | |||||||| || ||||| || || ||||| ||||| Sbjct 16062 CTTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || ||||||||||| || | || ||| ||| || |||||||| || Sbjct 15002 GTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTCCAGCTGTTTCCCT 15061 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | | |||||| || ||||| || || || |||||| ||||| || Sbjct 15062 GCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTGGCCTTG 15121 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||| | ||| ||||| | ||| | ||||||||||||| ||| Sbjct 15122 ACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTTGCCGGTCAAGGTT 15181 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 15182 TTGACAAAGATCTGCAT 15198 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||| |||||||| || | |||||| ||| ||||| ||||||||| Sbjct 15686 GTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCA 15745 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | ||||||||| || ||||| || ||||| ||||| |||||| || Sbjct 15746 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTAGCCTTC 15805 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||||| ||| ||||| | || | || || || || | ||| Sbjct 15806 ACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTTAATGTT 15865 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 15866 TTGACAAAAATTTGCAT 15882 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||||||||| ||||| || || ||| || || || ||||| || || Sbjct 16142 GTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTCAAGCTGCTTGCCG 16201 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | |||||||||||| ||||| || ||||| |||||| ||| ||| || Sbjct 16202 GCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTT 16261 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||| | | |||||| || | || | |||||||| || || || Sbjct 16262 ACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTTGCCAGTTAGGGTC 16321 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 16322 TTGACAAAGATTTGCAT 16338 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | | | |||| || | ||||| || || || ||||| |||||| Sbjct 16566 TACCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGG 16625 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| |||||||||||||||||| || |||| | | |||||| || || | Sbjct 16626 AAAGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTG 16685 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| ||||| || ||| ||| || | ||| | ||||| | ||| | Sbjct 16686 GGATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAA 16745 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | |||||||| || | || || || || |||||||| Sbjct 16746 CTTCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | | | || | |||| || || || ||||| ||||| |||||| Sbjct 16794 TACCTCCGCGAAGACGAAGGACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCGG 16853 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||| |||||||||||||| || |||| | | |||||| || || | Sbjct 16854 AAAGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGTG 16913 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || ||||| ||||| ||| || || || | ||||| || || | |||| || Sbjct 16914 GAATTCCCTCTTTGTCCTGAATCTTGGCCTTCACATTTTCGATCGTATCAGATGCT-TCA 16972 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| ||| | || || || |||| || || ||||||||||||||| Sbjct 16973 ACTTCGAGGGTGATGGTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCATG 17023 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| || ||||||||||| | || || |||||| |||||||| || Sbjct 16370 GTTGATTCTTTCTGGATGTTGTAATCAGAAAGCGTACGGCCATCCTCAAGCTGTTTGCCG 16429 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || || |||||||||||| |||||| || Sbjct 16430 GCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGAATTTTCGCCTTC 16489 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | ||||||| ||| || || | ||| | |||||||| || | || Sbjct 16490 ACGTTTTCAATTGTGTCCGAAGCCTCTACTTCAAGGGTAATAGTTTTGCCAGTTAAGGTC 16549 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 16550 TTGACGAAGATCTGCAT 16566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433806485505916