Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq4402 98.7 2e-15 >seq4402 Length=410039 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 189156 ACGCTTTGAGTAACTTATCTCCGTGGCTACATTTTGGTCATG-TATCCGCACAACGTGTT 189214 ||||| |||| || ||||| || ||| | ||||| || |||| |||| | |||||| | Sbjct 324619 ACGCTCTGAGCAATTTATCACCATGGTTTCATTTCGG-CATGATATCTGTACAACGATGT 324561 Query 189215 GCCTTAGAAGTATTAAAATGTATACGAGAAAGCaaaaaaaaC--GTTGAAACGTTTATAG 189272 ||||||||| | ||||| ||| || | || |||||| || |||| || || | Sbjct 324560 ATCTTAGAAGTGTCAAAAT--ATAAGAACAGTCACAAAAAATCTGTCGAAAGTTTCATGG 324503 Query 189273 ATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAACAAACATTATG 189332 | ||| || || || |||||| | || ||||||||||||| |||||| ||||||||| Sbjct 324502 AAGAAGCTATAGTTAGGAGAGAATTGTCCGATAATTTTTGTTTTTATAACGAACATTATG 324443 Query 189333 A 189333 | Sbjct 324442 A 324442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923144604760920