Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 113 5e-20
seq4491 109 6e-19
seq4302 109 6e-19
seq1113 109 6e-19
seq968 109 6e-19
seq4103 107 2e-18
seq4480 96.9 4e-15
seq2212 96.9 4e-15
>seq3846
Length=171336
Score = 113 bits (124), Expect = 5e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 42972 AACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCA 43031
|| |||| ||| || || ||||||||||| ||||| |||| || || || | ||
Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCATCT 15502
Query 43032 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091
|| |||||||| ||||| || ||||||||||| ||||| | || | || || |||||
Sbjct 15503 TCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 15562
Query 43092 ATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151
||||||| ||| | || | | |||||| | || || || | || ||||||
Sbjct 15563 TGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTT 15622
Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || || ||||| ||||| ||||||||
Sbjct 15623 TTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 113 bits (124), Expect = 5e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
||| ||||| | || | || ||||| || ||| || |||||||||||||| || |
Sbjct 16111 TCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGA 16170
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| ||| || |||| || |||||||| || ||||| || | |||||||| || | ||
Sbjct 16171 CAAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGG 16230
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134
| | ||| |||| | ||| | |||| || | | | | |||||| | || |
Sbjct 16231 AATTCCCTCTTTGT-CTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGA 16289
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || | ||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 16290 CTTCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
|| || || |||||||| || | | ||||| |||| || |||||||| ||||| ||
Sbjct 15920 TCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAG 15979
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| | ||||||||||| | || | | |||||||| | ||| |||| | || | |
Sbjct 15980 ATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGT-CTTGAATTTTCGCCTTTACATT 16038
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||| | || || || | ||||||||||||||| || || ||||| ||
Sbjct 16039 TTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAAC 16098
Query 43172 AAAGATTTGCATT 43184
|| |||||||||
Sbjct 16099 GAAAATTTGCATT 16111
>seq4491
Length=410418
Score = 109 bits (120), Expect = 6e-19
Identities = 75/84 (89%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
|||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct 202353 AAAAATTTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 202294
Query 60115 ACTCACCACTATACTACCGAGGAT 60138
||| ||||||||||||||||||||
Sbjct 202293 ACTTACCACTATACTACCGAGGAT 202270
>seq4302
Length=777177
Score = 109 bits (120), Expect = 6e-19
Identities = 78/87 (90%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
||||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 9446 AAAAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 9387
Query 60116 CTCACCACTATACTACCGAGGA-TTGA 60141
|| ||||||||||||||||||| ||||
Sbjct 9386 CTTACCACTATACTACCGAGGACTTGA 9360
>seq1113
Length=615210
Score = 109 bits (120), Expect = 6e-19
Identities = 77/87 (89%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 409605 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 409664
Query 60117 TCACCACTATACTACCGAGGA-TTGAA 60142
| ||||||||||||||||||| |||||
Sbjct 409665 TTACCACTATACTACCGAGGACTTGAA 409691
>seq968
Length=309140
Score = 109 bits (120), Expect = 6e-19
Identities = 79/90 (88%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
|| ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |
Sbjct 219672 ATAAAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 219613
Query 60114 TACTCACCACTATACTACCGAGGA-TTGAA 60142
|||| ||||||||||||||||||| |||||
Sbjct 219612 TACTGACCACTATACTACCGAGGACTTGAA 219583
>seq4103
Length=484527
Score = 107 bits (118), Expect = 2e-18
Identities = 74/84 (88%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
|| ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |
Sbjct 381326 ATAAAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 381385
Query 60114 TACTCACCACTATACTACCGAGGA 60137
|||| |||||||||||||||||||
Sbjct 381386 TACTTACCACTATACTACCGAGGA 381409
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 380764 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 380823
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 380824 TTACCACTATACTACCGAGGA 380844
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 376103 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 376162
Query 60126 TACTACCGAGGA 60137
||||||||||||
Sbjct 376163 TACTACCGAGGA 376174
>seq4480
Length=409792
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | ||||| || | || || || || || || || || |
Sbjct 402863 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 402804
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
|||||||||||||||| | || | | ||| |||||| |||||| |||| |
Sbjct 402803 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 402744
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | || ||| || ||||| || | |||||||| |||||||| || |||||||| |
Sbjct 402743 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 402684
Query 43174 AGATTTGCATT 43184
|||| ||||||
Sbjct 402683 AGATCTGCATT 402673
>seq2212
Length=252600
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | ||||| || | || || || || || || || || |
Sbjct 250289 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 250348
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
|||||||||||||||| | || | | ||| |||||| |||||| |||| |
Sbjct 250349 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 250408
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | || ||| || ||||| || | |||||||| |||||||| || |||||||| |
Sbjct 250409 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 250468
Query 43174 AGATTTGCATT 43184
|||| ||||||
Sbjct 250469 AGATCTGCATT 250479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571785270862440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |