Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq713 98.7 1e-15
seq3846 89.7 8e-13
>seq713
Length=327371
Score = 98.7 bits (108), Expect = 1e-15
Identities = 98/127 (77%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109
|||||| | ||| | | |||||| || | ||||||||||| ||||| ||||| ||
Sbjct 311366 TCCACCACGAAGGCGGAGTACCAAGTGAAGCGTAGATTCTTTCTGGATATTGTAATCGGA 311307
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||||||||| | ||| || | ||| || |||||||||||||| | |||||||| || ||
Sbjct 311306 AAGAGTTCTTCCATCCTCAAGTTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGG 311247
Query 146170 AATTCCT 146176
||| |||
Sbjct 311246 AATCCCT 311240
>seq3846
Length=171336
Score = 89.7 bits (98), Expect = 8e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||||||||| |||| | || |||||||| || |||||||| ||||| || || |
Sbjct 16110 TTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCG 16169
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| | ||| | | || || | || || || || |||||||| | |||||||| ||||
Sbjct 16170 ACAAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAG 16229
Query 146169 GAATTCCTTCTTTATCTTG 146187
||||||| ||||| |||||
Sbjct 16230 GAATTCCCTCTTTGTCTTG 16248
Score = 86.0 bits (94), Expect = 9e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140
|| |||||||| || || || || |||||||| | || ||| || | ||||||||||
Sbjct 15686 GTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCA 15745
Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
||||| ||||| | ||||| || ||||||||||| ||||| || ||
Sbjct 15746 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTG 15792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743484362876160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |