Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq713 98.7 1e-15 seq3846 89.7 8e-13 >seq713 Length=327371 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 |||||| | ||| | | |||||| || | ||||||||||| ||||| ||||| || Sbjct 311366 TCCACCACGAAGGCGGAGTACCAAGTGAAGCGTAGATTCTTTCTGGATATTGTAATCGGA 311307 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||| | ||| || | ||| || |||||||||||||| | |||||||| || || Sbjct 311306 AAGAGTTCTTCCATCCTCAAGTTGCTTGCCAGCAAAAATCAAACGCTGCTGATCAGGGGG 311247 Query 146170 AATTCCT 146176 ||| ||| Sbjct 311246 AATCCCT 311240 >seq3846 Length=171336 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| |||| | || |||||||| || |||||||| ||||| || || | Sbjct 16110 TTCCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCG 16169 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | || || | || || || || |||||||| | |||||||| |||| Sbjct 16170 ACAAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAG 16229 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||| ||||| ||||| Sbjct 16230 GAATTCCCTCTTTGTCTTG 16248 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 || |||||||| || || || || |||||||| | || ||| || | |||||||||| Sbjct 15686 GTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCA 15745 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||| | ||||| || ||||||||||| ||||| || || Sbjct 15746 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTG 15792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743484362876160