Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3112 86.0 5e-12 >seq3112 Length=543522 Score = 86.0 bits (94), Expect = 5e-12 Identities = 177/261 (68%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| | || ||||| ||| | || || ||| |||||||| ||||| | ||||| Sbjct 484990 TTTCCACTCTTGACTACAAAATGTGTCTTCTGGCGTGGCGTTGTCGAAGAACTTCTATGG 484931 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAA-AGGAGTTAAGATTTGGAG 20162 || |||| ||||||||| | | | || || | || | ||| || || ||||||| Sbjct 484930 TTCATTAGAGGATCAACGGACGCCAGAGATCTC-TCGAGTAGAGGTGTAAAAATTTGGAA 484872 Query 20163 CGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGA 20222 ||| | | ||| ||| ||| ||||| || ||| | | |||| || || Sbjct 484871 CGCCAACAGTTCTCGATCATTCTTAGACAGCTGCGGTTTTACTGATAGAGAAGAAGGCGA 484812 Query 20223 TTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAA 20282 | | || || || || || ||||| |||||||||||||| |||||||| || ||| | Sbjct 484811 TCTTGGGCCAGTCTACGGCTTTCAGTGGAGACATTTTGGTGCTGAATACAAAGATATGCA 484752 Query 20283 CACAAATTATTTTGGACAAGG 20303 ||| ||||| ||| |||| Sbjct 484751 TACAGATTATACAGGAAAAGG 484731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399161995356235