Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 102 6e-17
seq4480 93.3 3e-14
seq2212 93.3 3e-14
>seq3846
Length=171336
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
|||||| ||| || || || ||||||||||| || ||| | || || |||||
Sbjct 15679 GTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTG 15738
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|||||| || || ||||| ||||| ||||| ||||| | ||||| |||||| ||||||
Sbjct 15739 TTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTT 15798
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | ||||| | |||| ||||||| || || ||||| || ||
Sbjct 15799 AGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGT 15858
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
| || || ||||| ||||||||
Sbjct 15859 TAATGTTTTGACAAAAATTTGCAT 15882
Score = 86.0 bits (94), Expect = 5e-12
Identities = 136/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203
||||| |||||||||||||| || ||| || | || || || || ||||| || |
Sbjct 15464 TCCTTTTGAATGTTGTAGTCAGACAAGGTT--CGTCCATCTTCAAGCTGCTTTCCAGCAA 15521
Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263
| || | ||||||||||| || || | || || ||||| |||||| || ||
Sbjct 15522 AGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGT 15581
Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323
| | | |||| |||| || |||| |||||| || ||||| || ||||||||||
Sbjct 15582 TCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCA 15641
Query 45324 CAAAGATTTGCAT 45336
|||| ||||||||
Sbjct 15642 CAAAAATTTGCAT 15654
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|||||||||| || | || || || | ||| || || ||||| |||||||| |
Sbjct 16112 CCACCTCTCAGTCGAAGAACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGAC 16171
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| || |||| || || || || |||||||| ||||| ||||| || || |||||
Sbjct 16172 AAAGTACGTCCGTCTTCAAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 16231
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||||| ||||| ||| ||| ||| || | | |||| |||| ||
Sbjct 16232 ATTCCCTCTTTGTCTTGAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACT 16291
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| || || || ||||| || || ||||| ||||||||||||||
Sbjct 16292 TCCAACGTGATGGTTTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 16338
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTC 45186
|||||||| || || || ||||| || |||||||| | | || | || |||| ||
Sbjct 15902 ACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTC-CGTCCGTCTTC 15960
Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
|| || || || || || ||||| ||||| ||||| ||||| | |||||||||||
Sbjct 15961 AAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTG 16020
Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
|||||| ||| || | | |||| |||| || |||| || || || ||
Sbjct 16021 AATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTT 16080
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| || |||||||| || || ||||||||
Sbjct 16081 GCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110
>seq4480
Length=409792
Score = 93.3 bits (102), Expect = 3e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||| ||||||||||| || || | || || |||||||| ||||| || |
Sbjct 402863 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 402804
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
| | ||||| ||||| ||||| | ||||| |||||| ||||| ||| ||
Sbjct 402803 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 402744
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | | | || |||||||||| | || || |||||||||||||| ||||| || |
Sbjct 402743 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 402684
Query 45327 AGATTTGCATGTTGCCTCA 45345
|||| ||||| || ||||
Sbjct 402683 AGATCTGCATTGTGGCTCA 402665
>seq2212
Length=252600
Score = 93.3 bits (102), Expect = 3e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||| ||||||||||| || || | || || |||||||| ||||| || |
Sbjct 250289 CCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGA 250348
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
| | ||||| ||||| ||||| | ||||| |||||| ||||| ||| ||
Sbjct 250349 TGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTT 250408
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | | | || |||||||||| | || || |||||||||||||| ||||| || |
Sbjct 250409 CGATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 250468
Query 45327 AGATTTGCATGTTGCCTCA 45345
|||| ||||| || ||||
Sbjct 250469 AGATCTGCATTGTGGCTCA 250487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395053421849983
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |