Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq3919 125 6e-24
seq3846 125 6e-24
seq4498 100 3e-16
seq4480 87.8 2e-12
seq2212 87.8 2e-12
>seq3919
Length=163912
Score = 125 bits (138), Expect = 6e-24
Identities = 125/160 (78%), Gaps = 4/160 (3%)
Strand=Plus/Minus
Query 57694 TGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA- 57752
|||| |||||||| ||||| ||||| || || ||||| ||| | ||||| | |||||
Sbjct 143386 TGGCATTTTTCGCGGCATCGGATGGAATCGTCAACGAAAATCTAGTCGAGCG--TTTCAG 143329
Query 57753 -CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAA 57811
||||||||| || || || || || ||||||||||| |||||| | ||||| |||||
Sbjct 143328 CCAAGAAGTGACTGTAACAGAAGCCAGGTGCTTTTACGGCTTTCAAATAGCCATGGAAAA 143269
Query 57812 CGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC 57851
|| |||||||| ||||| ||||| ||||| || || |||
Sbjct 143268 TGTTCATTCAGAGATGTACTCGCTGCTCATAGACACTTAC 143229
Score = 114 bits (126), Expect = 1e-20
Identities = 95/116 (82%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569
|||||||| | ||| ||||| | ||||| ||||| || |||||| ||| || |||
Sbjct 143690 GAACCACTGCTTAGAGATAATCCTCAGAGATTCGTCATATTCCCGATTCAATGGCCGGAC 143631
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625
|||||||| ||||| |||||||||||||| || |||||||| ||||||||||||||
Sbjct 143630 ATTTGGAAAATGTATAAAAAGGCAGAAGCCTCATTTTGGACAGTCGAAGAAGTAGA 143575
>seq3846
Length=171336
Score = 125 bits (138), Expect = 6e-24
Identities = 161/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || |||||||| ||||| | || ||||| | |||
Sbjct 16110 ATGCAAATTTTCGTTAAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTCC 16051
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | |||| || || || ||| |||||||| || | || || ||||||
Sbjct 16050 GACACTATTGAAAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAG 15991
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGAC--TATGAGCGATTATA 31370
|||||| | || || |||||||| ||| | |||||| ||| ||| | || || |
Sbjct 15990 CAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCA--GACTACA 15933
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
| || || |||||||| |||||||| |||| || ||||
Sbjct 15932 ATATCCAGAAAGAATCTACTCTTCACTTGGTTCTCCGACT 15893
Score = 105 bits (116), Expect = 6e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || || || |||| |||||||| |||||| | || ||||| ||||
Sbjct 15198 ATGCAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCT 15139
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| ||||| | ||| ||||| ||||| | || || ||||||
Sbjct 15138 GACACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 15079
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | |||||||||| || |||||| ||||||| || | || || |||
Sbjct 15078 CAGAGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAAC 15019
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||||| || || || |||||||||||||| |||
Sbjct 15018 ATTCAGAAGGAGTCTACTCTTCATCTGGTTCTT 14986
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || |||||||| || ||| | || || || | |||
Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || ||| | ||| ||||| |||||| | || || |||||
Sbjct 15594 GACACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 15535
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
||||| || || || ||||| || ||| | ||||| | | | || || || || ||
Sbjct 15534 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGA-TGGACGAACCTTGTCTGACTACAA 15476
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||||||| ||||| || | |||||||| | || ||| | || ||||
Sbjct 15475 CATTCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCTGCGTGGAGGTA 15426
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| | || |||||||| |||||| | || ||||| | ||
Sbjct 16794 ATGCAGATCTTCGTGAAGACCTTAACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCT 16735
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| || ||| || ||| | |||||| || || | || || |||||
Sbjct 16734 GACACGATTGAAAATGTGAAAGCAAAGA-TCCAGGACAAAGAGGGAATCCCACCAGACCA 16676
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | |||| || || || |||||| | || || ||| | |||||||||
Sbjct 16675 GCAGAGATTAATCTTTGCCGGAAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAA 16616
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || ||||| |||||||||||||| ||| | || | || ||||
Sbjct 16615 CATCCAGAAGGAATCTACTCTTCATCTGGTCCTTCGTCTCCGCGGAGGTA 16566
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| || || |||||||| ||||| | || || || | |||
Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | | |||| || || || ||| | | |||| || || | || || || ||
Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAG-ACAAAGAGGGAATTCCTCCAGATCA 16220
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||| | || ||||| ||||| ||| | |||||| ||| || || || ||
Sbjct 16219 GCAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAA 16160
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|||||||||||||| || | ||| | || ||| ||||||| || ||
Sbjct 16159 TATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGG 16112
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||||||||| ||||| || ||||| |||| || || || |||||| |||| |||||| |
Sbjct 17026 AAACATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACCATCACCCTCGAAGTTGAAGC 16967
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
|| || | |||||| || || | || |||||| || || | || || ||
Sbjct 16966 ATCTGATACGATCGAAAATGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGA 16907
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368
||||||| | | || || || || |||||| | ||||| || | ||||||
Sbjct 16906 CCAGCAGAGATTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTA 16847
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||| ||||| ||||| || || ||||| || ||| | || | || ||||
Sbjct 16846 TAACATCCAAAAGGAATCCACCCTCCATCTAGTCCTTCGTCTTCGCGGAGGTA 16794
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || || ||||| || || || || || || | || || || | ||
Sbjct 15426 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCT 15367
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | ||| |||||||| || | || || ||||||
Sbjct 15366 GATACAATAGAGAACGTGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 15307
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | |||| || ||||| |||||| ||||||| ||| | ||| |||||
Sbjct 15306 CAGAGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAAT 15247
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| || || || |||||||| || || |||| | |||||||
Sbjct 15246 ATTCAAAAGGAGTCCACCCTTCATCTAGTTCTCCGACTACGTGGCGGTA 15198
Score = 86.0 bits (94), Expect = 6e-12
Identities = 160/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| | || |||||||| || ||| | || || || | ||
Sbjct 16566 ATGCAGATCTTCGTCAAGACCTTAACTGGCAAAACTATTACCCTTGAAGTAGAGGCTTCG 16507
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| || || || ||| |||||||| || | || || ||||||
Sbjct 16506 GACACAATTGAAAACGTGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 16447
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369
||| | | || || || ||||||||| | || || | || | || | | ||||
Sbjct 16446 CAGAGGTTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACG-CTTTCTG--ATTAC 16390
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || |||||||| ||||||||||| || ||| | || | || ||||
Sbjct 16389 AACATCCAGAAAGAATCAACTCTTCATCTTGTCCTTCGTCTCCGTGGAGGTA 16338
>seq4498
Length=49303
Score = 100 bits (110), Expect = 3e-16
Identities = 155/221 (70%), Gaps = 3/221 (1%)
Strand=Plus/Plus
Query 22454 TTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGT 22513
|| || | |||||| || || || ||||| |||||| |||| |||| || | | |
Sbjct 41199 TTGACTATTTGAAATTCTCCAGATAAGACTCGGCGTGTATAAACGTTGCTGGTATAAGCT 41258
Query 22514 TCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAAC 22573
|||| ||||||||||| || || || || || || || || |||||||| || || |
Sbjct 41259 TCGATTGATTCATTGTTCCCGAGAATTTGTGCTGTGGATGCAGTCGGCATTGGGGCTATG 41318
Query 22574 AGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCAC 22633
|||||||| || | | |||||| || | || ||| || || | |||||||||
Sbjct 41319 AGTAGCGAATTCCGTACGCCGTGTTTAGCTATCTTAGCTTTCAGAGCTGCCCAGTCCCAA 41378
Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674
||||| | || || ||||| |||||| || || |||||
Sbjct 41379 AGATCTGTTGGTGTGACATT---CCACATGTCATACTGCAA 41416
Score = 95.1 bits (104), Expect = 1e-14
Identities = 191/280 (68%), Gaps = 4/280 (1%)
Strand=Plus/Plus
Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482
||||||||||||||||| || || || |||| ||||| || || | |||||| |||||
Sbjct 42517 TTTTTCAAATCCAAAAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAAACTGCAAAG 42576
Query 23483 GCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTT 23542
|| || || ||||||||||| || || || ||||| | || || || || || || |
Sbjct 42577 GCACCTGGCCTCTTATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTATATACGCGC 42636
Query 23543 AGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCT 23602
| ||| || || || ||| | || | || || || | | |||||| |||
Sbjct 42637 AACATAGGAACAAGTCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTACCTTTGGCT 42696
Query 23603 C-GA-ACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATT 23660
| || || ||| | | || || | ||||| | || || ||||| |||||||
Sbjct 42697 CTGATACAATGT--ATATTTAATCCAACACCTCCCGCAGACTTACTTATCAGTGCGCATT 42754
Query 23661 GTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700
|||||| ||| || || || || || || || ||||| ||
Sbjct 42755 GTTTCAAAGTATCATAAATTCCTTCAATACTATCCTCCTT 42794
Score = 86.0 bits (94), Expect = 6e-12
Identities = 125/174 (72%), Gaps = 6/174 (3%)
Strand=Plus/Plus
Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGC 23308
|||| | |||||| || |||||||| |||| || || |||| || || |||
Sbjct 42258 TACTGTGTGTACAAAGCTTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCG 42317
Query 23309 ATCGGACACATGAGACTCCACATTGAGTCATTTTC---AACGCGTCTCATAAAAAGATCC 23365
||||||||||| ||||| | | || ||||| ||| ||| ||||||| | |||
Sbjct 42318 TGAGGACACATGAGGCTCCAAACTT-GT--TTTTCCAAAACACGTTTCATAAACAAATCA 42374
Query 23366 GGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419
|| ||||| || ||||| |||| ||| | || |||| |||||||||||| |||
Sbjct 42375 GGAATCCAAAGGGCGTAAAACATTTCTCTAGCTCGCATCTCCTCTTTGCCTGTG 42428
>seq4480
Length=409792
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||||||||| ||||| ||||| || ||||| | || || || |||||
Sbjct 402674 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTCC 402733
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||||| ||||| | ||| |||||| || || | || || ||||||
Sbjct 402734 GATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 402793
Query 31313 CAGCGTCTAATATTCGCTGGCAAACA 31338
||||| || || || || ||||||||
Sbjct 402794 CAGCGACTCATCTTTGCCGGCAAACA 402819
>seq2212
Length=252600
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||||||||| ||||| ||||| || ||||| | || || || |||||
Sbjct 250478 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTCC 250419
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||||| ||||| | ||| |||||| || || | || || ||||||
Sbjct 250418 GATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 250359
Query 31313 CAGCGTCTAATATTCGCTGGCAAACA 31338
||||| || || || || ||||||||
Sbjct 250358 CAGCGACTCATCTTTGCCGGCAAACA 250333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445741197482160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |