Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3919 125 6e-24 seq3846 125 6e-24 seq4498 100 3e-16 seq4480 87.8 2e-12 seq2212 87.8 2e-12 >seq3919 Length=163912 Score = 125 bits (138), Expect = 6e-24 Identities = 125/160 (78%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 57694 TGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA- 57752 |||| |||||||| ||||| ||||| || || ||||| ||| | ||||| | ||||| Sbjct 143386 TGGCATTTTTCGCGGCATCGGATGGAATCGTCAACGAAAATCTAGTCGAGCG--TTTCAG 143329 Query 57753 -CAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAA 57811 ||||||||| || || || || || ||||||||||| |||||| | ||||| ||||| Sbjct 143328 CCAAGAAGTGACTGTAACAGAAGCCAGGTGCTTTTACGGCTTTCAAATAGCCATGGAAAA 143269 Query 57812 CGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC 57851 || |||||||| ||||| ||||| ||||| || || ||| Sbjct 143268 TGTTCATTCAGAGATGTACTCGCTGCTCATAGACACTTAC 143229 Score = 114 bits (126), Expect = 1e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 |||||||| | ||| ||||| | ||||| ||||| || |||||| ||| || ||| Sbjct 143690 GAACCACTGCTTAGAGATAATCCTCAGAGATTCGTCATATTCCCGATTCAATGGCCGGAC 143631 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 |||||||| ||||| |||||||||||||| || |||||||| |||||||||||||| Sbjct 143630 ATTTGGAAAATGTATAAAAAGGCAGAAGCCTCATTTTGGACAGTCGAAGAAGTAGA 143575 >seq3846 Length=171336 Score = 125 bits (138), Expect = 6e-24 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || |||||||| ||||| | || ||||| | ||| Sbjct 16110 ATGCAAATTTTCGTTAAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTCC 16051 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || || || ||| |||||||| || | || || |||||| Sbjct 16050 GACACTATTGAAAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAG 15991 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGAC--TATGAGCGATTATA 31370 |||||| | || || |||||||| ||| | |||||| ||| ||| | || || | Sbjct 15990 CAGCGTTTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCA--GACTACA 15933 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 | || || |||||||| |||||||| |||| || |||| Sbjct 15932 ATATCCAGAAAGAATCTACTCTTCACTTGGTTCTCCGACT 15893 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || |||| |||||||| |||||| | || ||||| |||| Sbjct 15198 ATGCAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCT 15139 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | ||| ||||| ||||| | || || |||||| Sbjct 15138 GACACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAG 15079 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | |||||||||| || |||||| ||||||| || | || || ||| Sbjct 15078 CAGAGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAAC 15019 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || |||||||||||||| ||| Sbjct 15018 ATTCAGAAGGAGTCTACTCTTCATCTGGTTCTT 14986 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || |||||||| || ||| | || || || | ||| Sbjct 15654 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCC 15595 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | ||| ||||| |||||| | || || ||||| Sbjct 15594 GACACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAA 15535 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 ||||| || || || ||||| || ||| | ||||| | | | || || || || || Sbjct 15534 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAAGA-TGGACGAACCTTGTCTGACTACAA 15476 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| ||||| || | |||||||| | || ||| | || |||| Sbjct 15475 CATTCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCTGCGTGGAGGTA 15426 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| | || |||||||| |||||| | || ||||| | || Sbjct 16794 ATGCAGATCTTCGTGAAGACCTTAACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCT 16735 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || ||| || ||| | |||||| || || | || || ||||| Sbjct 16734 GACACGATTGAAAATGTGAAAGCAAAGA-TCCAGGACAAAGAGGGAATCCCACCAGACCA 16676 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | |||| || || || |||||| | || || ||| | ||||||||| Sbjct 16675 GCAGAGATTAATCTTTGCCGGAAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAA 16616 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || ||||| |||||||||||||| ||| | || | || |||| Sbjct 16615 CATCCAGAAGGAATCTACTCTTCATCTGGTCCTTCGTCTCCGCGGAGGTA 16566 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || |||||||| ||||| | || || || | ||| Sbjct 16338 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCC 16279 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || || || ||| | | |||| || || | || || || || Sbjct 16278 GACACTATTGAAAATGTAAAGGCAAAGATTCAAG-ACAAAGAGGGAATTCCTCCAGATCA 16220 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || ||||| ||||| ||| | |||||| ||| || || || || Sbjct 16219 GCAGCGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAA 16160 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||||| || | ||| | || ||| ||||||| || || Sbjct 16159 TATTCAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGAGGTGG 16112 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| ||||| || ||||| |||| || || || |||||| |||| |||||| | Sbjct 17026 AAACATGCAGATTTTTGTCAAGACCTTGACGGGGAAGACCATCACCCTCGAAGTTGAAGC 16967 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | |||||| || || | || |||||| || || | || || || Sbjct 16966 ATCTGATACGATCGAAAATGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGA 16907 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | | || || || || |||||| | ||||| || | |||||| Sbjct 16906 CCAGCAGAGATTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTA 16847 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| ||||| ||||| || || ||||| || ||| | || | || |||| Sbjct 16846 TAACATCCAAAAGGAATCCACCCTCCATCTAGTCCTTCGTCTTCGCGGAGGTA 16794 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || || || || || || | || || || | || Sbjct 15426 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCT 15367 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | ||| |||||||| || | || || |||||| Sbjct 15366 GATACAATAGAGAACGTGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 15307 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | |||| || ||||| |||||| ||||||| ||| | ||| ||||| Sbjct 15306 CAGAGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAAT 15247 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || || |||||||| || || |||| | ||||||| Sbjct 15246 ATTCAAAAGGAGTCCACCCTTCATCTAGTTCTCCGACTACGTGGCGGTA 15198 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| | || |||||||| || ||| | || || || | || Sbjct 16566 ATGCAGATCTTCGTCAAGACCTTAACTGGCAAAACTATTACCCTTGAAGTAGAGGCTTCG 16507 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || || ||| |||||||| || | || || |||||| Sbjct 16506 GACACAATTGAAAACGTGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAG 16447 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369 ||| | | || || || ||||||||| | || || | || | || | | |||| Sbjct 16446 CAGAGGTTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACG-CTTTCTG--ATTAC 16390 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| ||||||||||| || ||| | || | || |||| Sbjct 16389 AACATCCAGAAAGAATCAACTCTTCATCTTGTCCTTCGTCTCCGTGGAGGTA 16338 >seq4498 Length=49303 Score = 100 bits (110), Expect = 3e-16 Identities = 155/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 22454 TTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGT 22513 || || | |||||| || || || ||||| |||||| |||| |||| || | | | Sbjct 41199 TTGACTATTTGAAATTCTCCAGATAAGACTCGGCGTGTATAAACGTTGCTGGTATAAGCT 41258 Query 22514 TCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAAC 22573 |||| ||||||||||| || || || || || || || || |||||||| || || | Sbjct 41259 TCGATTGATTCATTGTTCCCGAGAATTTGTGCTGTGGATGCAGTCGGCATTGGGGCTATG 41318 Query 22574 AGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCAC 22633 |||||||| || | | |||||| || | || ||| || || | ||||||||| Sbjct 41319 AGTAGCGAATTCCGTACGCCGTGTTTAGCTATCTTAGCTTTCAGAGCTGCCCAGTCCCAA 41378 Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674 ||||| | || || ||||| |||||| || || ||||| Sbjct 41379 AGATCTGTTGGTGTGACATT---CCACATGTCATACTGCAA 41416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/280 (68%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482 ||||||||||||||||| || || || |||| ||||| || || | |||||| ||||| Sbjct 42517 TTTTTCAAATCCAAAAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAAACTGCAAAG 42576 Query 23483 GCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTT 23542 || || || ||||||||||| || || || ||||| | || || || || || || | Sbjct 42577 GCACCTGGCCTCTTATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTATATACGCGC 42636 Query 23543 AGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCT 23602 | ||| || || || ||| | || | || || || | | |||||| ||| Sbjct 42637 AACATAGGAACAAGTCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTACCTTTGGCT 42696 Query 23603 C-GA-ACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATT 23660 | || || ||| | | || || | ||||| | || || ||||| ||||||| Sbjct 42697 CTGATACAATGT--ATATTTAATCCAACACCTCCCGCAGACTTACTTATCAGTGCGCATT 42754 Query 23661 GTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 |||||| ||| || || || || || || || ||||| || Sbjct 42755 GTTTCAAAGTATCATAAATTCCTTCAATACTATCCTCCTT 42794 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 23249 TACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGC 23308 |||| | |||||| || |||||||| |||| || || |||| || || ||| Sbjct 42258 TACTGTGTGTACAAAGCTTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCG 42317 Query 23309 ATCGGACACATGAGACTCCACATTGAGTCATTTTC---AACGCGTCTCATAAAAAGATCC 23365 ||||||||||| ||||| | | || ||||| ||| ||| ||||||| | ||| Sbjct 42318 TGAGGACACATGAGGCTCCAAACTT-GT--TTTTCCAAAACACGTTTCATAAACAAATCA 42374 Query 23366 GGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 || ||||| || ||||| |||| ||| | || |||| |||||||||||| ||| Sbjct 42375 GGAATCCAAAGGGCGTAAAACATTTCTCTAGCTCGCATCTCCTCTTTGCCTGTG 42428 >seq4480 Length=409792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| ||||| ||||| || ||||| | || || || ||||| Sbjct 402674 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTCC 402733 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| ||||| | ||| |||||| || || | || || |||||| Sbjct 402734 GATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 402793 Query 31313 CAGCGTCTAATATTCGCTGGCAAACA 31338 ||||| || || || || |||||||| Sbjct 402794 CAGCGACTCATCTTTGCCGGCAAACA 402819 >seq2212 Length=252600 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| ||||| ||||| || ||||| | || || || ||||| Sbjct 250478 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTCC 250419 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| ||||| | ||| |||||| || || | || || |||||| Sbjct 250418 GATACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 250359 Query 31313 CAGCGTCTAATATTCGCTGGCAAACA 31338 ||||| || || || || |||||||| Sbjct 250358 CAGCGACTCATCTTTGCCGGCAAACA 250333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445741197482160