Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3919 98.7 2e-15 seq3112 95.1 2e-14 >seq3919 Length=163912 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||||| Sbjct 142336 GTTGCCTTTGCAGCAGTCGAAGGGATCTTCTTCAGTGGAAGTTTCGCCTCCATATTCTGG 142277 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 |||| || | || | |||| ||||| |||| | ||| ||| ||||||| |||||| Sbjct 142276 CTCAAAAAGCGTGGATTGATGCCAGGTCTGACCTTCAGCAACGAGCTCATTTCCAGGGAC 142217 Query 102038 GA 102039 || Sbjct 142216 GA 142215 >seq3112 Length=543522 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 |||||| | || ||||| |||||||| |||||||| || || || ||||||| | Sbjct 484963 TTCTGGCGTGGCGTTGTCGAAGAACTTCTATGGTTCATTAGAGGATCAACGGACGCCAGA 484904 Query 35309 GAATTGGCCAAGAAGAAGA-TACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGA 35367 || | | | | ||| | || | || |||||||| || | || || ||| || || Sbjct 484903 GATCTCTCGA-GTAGAGGTGTAAAAATTTGGAACGCCAACAGTTCTCGATCATTCTTAGA 484845 Query 35368 CAGTAGAGGGTTATAC-GATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAAT 35426 ||| | || || ||| ||||||| ||| || ||| | || || || ||||| || || | Sbjct 484844 CAGCTGCGGTTT-TACTGATAGAGAAGAAGGCGATCTTGGGCCAGTCTACGGCTTTCAGT 484786 Query 35427 GGCGTCATTTTGGTGCTGAATATGATACCTGTTC-TTCCGATTATACTGGAAAGGGTAT 35484 || | ||||||||||||||||| | | | | | | | |||||||| ||||| ||||| Sbjct 484785 GGAGACATTTTGGTGCTGAATA-CAAAGATATGCATACAGATTATACAGGAAAAGGTAT 484728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989526652679465