Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq3919 98.7 2e-15
seq3112 95.1 2e-14
>seq3919
Length=163912
Score = 98.7 bits (108), Expect = 2e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| ||||||
Sbjct 142336 GTTGCCTTTGCAGCAGTCGAAGGGATCTTCTTCAGTGGAAGTTTCGCCTCCATATTCTGG 142277
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
|||| || | || | |||| ||||| |||| | ||| ||| ||||||| ||||||
Sbjct 142276 CTCAAAAAGCGTGGATTGATGCCAGGTCTGACCTTCAGCAACGAGCTCATTTCCAGGGAC 142217
Query 102038 GA 102039
||
Sbjct 142216 GA 142215
>seq3112
Length=543522
Score = 95.1 bits (104), Expect = 2e-14
Identities = 169/239 (71%), Gaps = 6/239 (3%)
Strand=Plus/Minus
Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308
|||||| | || ||||| |||||||| |||||||| || || || ||||||| |
Sbjct 484963 TTCTGGCGTGGCGTTGTCGAAGAACTTCTATGGTTCATTAGAGGATCAACGGACGCCAGA 484904
Query 35309 GAATTGGCCAAGAAGAAGA-TACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGA 35367
|| | | | | ||| | || | || |||||||| || | || || ||| || ||
Sbjct 484903 GATCTCTCGA-GTAGAGGTGTAAAAATTTGGAACGCCAACAGTTCTCGATCATTCTTAGA 484845
Query 35368 CAGTAGAGGGTTATAC-GATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAAT 35426
||| | || || ||| ||||||| ||| || ||| | || || || ||||| || || |
Sbjct 484844 CAGCTGCGGTTT-TACTGATAGAGAAGAAGGCGATCTTGGGCCAGTCTACGGCTTTCAGT 484786
Query 35427 GGCGTCATTTTGGTGCTGAATATGATACCTGTTC-TTCCGATTATACTGGAAAGGGTAT 35484
|| | ||||||||||||||||| | | | | | | | |||||||| ||||| |||||
Sbjct 484785 GGAGACATTTTGGTGCTGAATA-CAAAGATATGCATACAGATTATACAGGAAAAGGTAT 484728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989526652679465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |