Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4498 165 1e-35 seq3919 107 2e-18 >seq4498 Length=49303 Score = 165 bits (182), Expect = 1e-35 Identities = 238/335 (71%), Gaps = 3/335 (1%) Strand=Plus/Plus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 |||| || |||||||||||| ||||||| |||||||||| ||||| ||||| || || | Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844 Query 62848 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 |||| |||||||| || || || | | | | |||| || ||||| ||||| || Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904 Query 62908 AATCAAATCGCCCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACA 62964 |||| || | || | ||||||||||| | |||| ||||| |||||||| | Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964 Query 62965 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 63024 | || || || | || | ||||| ||| || ||||||||||||||||| || |||| Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024 Query 63025 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63084 | || || | || |||||||| || || || ||| || || || ||| ||| Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTATG 42084 Query 63085 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63119 | || |||||||||| |||||| | || || ||| Sbjct 42085 GTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119 Score = 102 bits (112), Expect = 1e-16 Identities = 173/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 62316 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 62375 |||||| ||||| || | |||| ||||| | | | | || | | || | || | | Sbjct 41133 ATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTAGCAGTAAGATCTGTTAGTAAA 41192 Query 62376 TGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62435 || || || |||| ||| ||||||||||| || |||| || || |||| || |||||| Sbjct 41193 TGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGGCGTGTATAAACGTTGCTGGTA 41252 Query 62436 TACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62495 || | ||| | || ||||| || || | |||||| || || |||||||||||||| || Sbjct 41253 TAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCTGTGGATGCAGTCGGCATTGGG 41312 Query 62496 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAA 62555 || | | || ||| | | |||| | | || ||| |||| ||| | |||| Sbjct 41313 GCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATCTTAGCTTTCAGAGCTGCCCAG 41372 Query 62556 TTCCAAAGATC 62566 | ||||||||| Sbjct 41373 TCCCAAAGATC 41383 >seq3919 Length=163912 Score = 107 bits (118), Expect = 2e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 |||| |||| ||| |||||||| |||||||||||||| || ||||||||||||||||| | Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 |||| ||||| | |||| || ||||| || || ||||| | ||||| Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATT 143672 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||| || ||| | ||||| || || || || ||||| | |||||||||| Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| |||||||| ||||| ||| |||||||| ||||| ||||| ||||||| Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 33780 ||| | || ||| || | || ||||| | |||||| || | ||||| | | Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 ||||||| ||||| || | |||| |||||||| || || Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACAG 142435 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| || ||| |||||||||||| || || || ||||| |||||||| || ||||| Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370 | ||||| |||||||||||||| |||||||| Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629781991687440