Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 165 1e-35
seq3919 107 2e-18
>seq4498
Length=49303
Score = 165 bits (182), Expect = 1e-35
Identities = 238/335 (71%), Gaps = 3/335 (1%)
Strand=Plus/Plus
Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847
|||| || |||||||||||| ||||||| |||||||||| ||||| ||||| || || |
Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844
Query 62848 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907
|||| |||||||| || || || | | | | |||| || ||||| ||||| ||
Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904
Query 62908 AATCAAATCGCCCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACA 62964
|||| || | || | ||||||||||| | |||| ||||| |||||||| |
Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964
Query 62965 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 63024
| || || || | || | ||||| ||| || ||||||||||||||||| || ||||
Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024
Query 63025 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63084
| || || | || |||||||| || || || ||| || || || ||| |||
Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTATG 42084
Query 63085 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63119
| || |||||||||| |||||| | || || |||
Sbjct 42085 GTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119
Score = 102 bits (112), Expect = 1e-16
Identities = 173/251 (69%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 62316 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 62375
|||||| ||||| || | |||| ||||| | | | | || | | || | || | |
Sbjct 41133 ATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTAGCAGTAAGATCTGTTAGTAAA 41192
Query 62376 TGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62435
|| || || |||| ||| ||||||||||| || |||| || || |||| || ||||||
Sbjct 41193 TGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGGCGTGTATAAACGTTGCTGGTA 41252
Query 62436 TACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62495
|| | ||| | || ||||| || || | |||||| || || |||||||||||||| ||
Sbjct 41253 TAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCTGTGGATGCAGTCGGCATTGGG 41312
Query 62496 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAA 62555
|| | | || ||| | | |||| | | || ||| |||| ||| | ||||
Sbjct 41313 GCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATCTTAGCTTTCAGAGCTGCCCAG 41372
Query 62556 TTCCAAAGATC 62566
| |||||||||
Sbjct 41373 TCCCAAAGATC 41383
>seq3919
Length=163912
Score = 107 bits (118), Expect = 2e-18
Identities = 89/109 (82%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125
|||| |||| ||| |||||||| |||||||||||||| || ||||||||||||||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174
|||| ||||| | |||| || ||||| || || ||||| | |||||
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATT 143672
Score = 98.7 bits (108), Expect = 1e-15
Identities = 156/223 (70%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
||||||| || ||| | ||||| || || || || ||||| | ||||||||||
Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| |||||||| ||||| ||| |||||||| ||||| ||||| |||||||
Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332
Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 33780
||| | || ||| || | || ||||| | |||||| || | ||||| | |
Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392
Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823
||||||| ||||| || | |||| |||||||| || ||
Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACAG 142435
Score = 82.4 bits (90), Expect = 1e-10
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337
||| || ||| |||||||||||| || || || ||||| |||||||| || |||||
Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522
Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370
| ||||| |||||||||||||| ||||||||
Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629781991687440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |