Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4498 120 3e-22 >seq4498 Length=49303 Score = 120 bits (132), Expect = 3e-22 Identities = 198/286 (69%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 38109 AAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTT 38168 ||| || || | ||| | |||||||||||||| |||| | | || ||||| || || Sbjct 42531 AAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAAACTGCAAAGGCACCTGGCCTCTT 42590 Query 38169 ATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTAT 38228 || ||||| || | || || || |||| |||||||||| | |||||||| || | Sbjct 42591 ATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTATATACGCGCAACATAGGAACAAG 42650 Query 38229 ACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTAT 38288 || |||||| || || | || | ||| |||||||| || |||| ||| | ||| Sbjct 42651 TCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTACCTTTGGCTCTGATACAATGTAT 42710 Query 38289 CGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAA 38348 ||||| | || || ||| || ||| | ||||||||||| || |||||| | Sbjct 42711 ATTTAATCCAACACCTCCCGCAGACTTACTTATCAGTGCGCATTGTTTCAAAGTATCATA 42770 Query 38349 TATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 || ||||| ||||| || ||||| |||| | | |||||| ||| Sbjct 42771 AATTCCTTCAATACTATCCTCCTTCATTGTCAAAAGAAAACAGCTA 42816 Score = 98.7 bits (108), Expect = 9e-16 Identities = 213/314 (68%), Gaps = 10/314 (3%) Strand=Plus/Plus Query 37044 TTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCT 37103 ||||| ||||||||||| | ||| ||||| || | | || ||| | || | | Sbjct 41111 TTGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTT 41170 Query 37104 ACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCT 37163 | | || ||| | | || || ||||| || | ||||| ||||||||||| |||| Sbjct 41171 AGCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCG 41230 Query 37164 TCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGA 37223 | |||||| | ||||| ||||| | ||| || || ||||| || | | ||||| | Sbjct 41231 GCGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGC 41290 Query 37224 TGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAAT 37283 ||| |||||||| |||||||| ||||| || || ||| | | || ||| ||| Sbjct 41291 TGTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGT---TTAGC 41347 Query 37284 TCTCTT---TTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACATA 37338 | |||| ||| || | ||| ||||| | ||||||||| || | || |||||| Sbjct 41348 TATCTTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACATT--CCACATG 41405 Query 37339 TCATATTGTAGAAT 37352 ||||| || | ||| Sbjct 41406 TCATACTGCAAAAT 41419 Score = 86.0 bits (94), Expect = 6e-12 Identities = 169/248 (68%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 38388 ACAACTAGACATTTGAGGCAATGGAGTTCCGGCGT--TAAATAATGTAGGAGATGCATGT 38445 ||| || |||||||| ||| ||||| | || |||| | || ||||| ||||| Sbjct 42902 ACACCTCGACATTTGTGGCCTGGGAGTAGCTGCTGAGTAAAGAGTG--GGAGAAGCATGG 42959 Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505 | || ||||||| ||||| ||| || ||||| ||| | ||| ||||| | || Sbjct 42960 GTAAAATATTTTTCTGACAATAGATTGTAGGTTTCAATTGCTCTATCAATATCTTCTCCA 43019 Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTC 38565 |||||||| | || || | ||| | || |||||||||||| ||| | ||| ||| Sbjct 43020 TGAATACCCACAGCAACACGCATCAACAAATGTTGTGGTCTCTCTGCGACTTTGCCATTA 43079 Query 38566 TGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCT 38625 ||| || | ||| | |||| | |||||| | ||||| ||| |||| | ||||| Sbjct 43080 ATTTTCAGCAAATAACTTCTTTCGAGTGTTTTGAAGCCAAAGTAATTATAACTAAAATCT 43139 Query 38626 CTATCGTA 38633 || || || Sbjct 43140 CTGTCATA 43147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468498310779120