Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 120 3e-22
>seq4498
Length=49303
Score = 120 bits (132), Expect = 3e-22
Identities = 198/286 (69%), Gaps = 0/286 (0%)
Strand=Plus/Plus
Query 38109 AAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTT 38168
||| || || | ||| | |||||||||||||| |||| | | || ||||| || ||
Sbjct 42531 AAACTCAAAAACATCCGGGTGCCATGGTTCTAAGTAAACTGCAAAGGCACCTGGCCTCTT 42590
Query 38169 ATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTAT 38228
|| ||||| || | || || || |||| |||||||||| | |||||||| || |
Sbjct 42591 ATTGCCTCCTTGGTCAACGTACCTTGCTGTATTATTATATACGCGCAACATAGGAACAAG 42650
Query 38229 ACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTAT 38288
|| |||||| || || | || | ||| |||||||| || |||| ||| | |||
Sbjct 42651 TCCGCTAGATTCTCCATTAGTTCCTGCTATGTAAGTACCTTTGGCTCTGATACAATGTAT 42710
Query 38289 CGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAA 38348
||||| | || || ||| || ||| | ||||||||||| || |||||| |
Sbjct 42711 ATTTAATCCAACACCTCCCGCAGACTTACTTATCAGTGCGCATTGTTTCAAAGTATCATA 42770
Query 38349 TATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394
|| ||||| ||||| || ||||| |||| | | |||||| |||
Sbjct 42771 AATTCCTTCAATACTATCCTCCTTCATTGTCAAAAGAAAACAGCTA 42816
Score = 98.7 bits (108), Expect = 9e-16
Identities = 213/314 (68%), Gaps = 10/314 (3%)
Strand=Plus/Plus
Query 37044 TTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCT 37103
||||| ||||||||||| | ||| ||||| || | | || ||| | || | |
Sbjct 41111 TTGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTT 41170
Query 37104 ACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCT 37163
| | || ||| | | || || ||||| || | ||||| ||||||||||| ||||
Sbjct 41171 AGCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCG 41230
Query 37164 TCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGA 37223
| |||||| | ||||| ||||| | ||| || || ||||| || | | ||||| |
Sbjct 41231 GCGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGC 41290
Query 37224 TGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAAT 37283
||| |||||||| |||||||| ||||| || || ||| | | || ||| |||
Sbjct 41291 TGTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGT---TTAGC 41347
Query 37284 TCTCTT---TTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACATA 37338
| |||| ||| || | ||| ||||| | ||||||||| || | || ||||||
Sbjct 41348 TATCTTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACATT--CCACATG 41405
Query 37339 TCATATTGTAGAAT 37352
||||| || | |||
Sbjct 41406 TCATACTGCAAAAT 41419
Score = 86.0 bits (94), Expect = 6e-12
Identities = 169/248 (68%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 38388 ACAACTAGACATTTGAGGCAATGGAGTTCCGGCGT--TAAATAATGTAGGAGATGCATGT 38445
||| || |||||||| ||| ||||| | || |||| | || ||||| |||||
Sbjct 42902 ACACCTCGACATTTGTGGCCTGGGAGTAGCTGCTGAGTAAAGAGTG--GGAGAAGCATGG 42959
Query 38446 ATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCG 38505
| || ||||||| ||||| ||| || ||||| ||| | ||| ||||| | ||
Sbjct 42960 GTAAAATATTTTTCTGACAATAGATTGTAGGTTTCAATTGCTCTATCAATATCTTCTCCA 43019
Query 38506 TGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTC 38565
|||||||| | || || | ||| | || |||||||||||| ||| | ||| |||
Sbjct 43020 TGAATACCCACAGCAACACGCATCAACAAATGTTGTGGTCTCTCTGCGACTTTGCCATTA 43079
Query 38566 TGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCT 38625
||| || | ||| | |||| | |||||| | ||||| ||| |||| | |||||
Sbjct 43080 ATTTTCAGCAAATAACTTCTTTCGAGTGTTTTGAAGCCAAAGTAATTATAACTAAAATCT 43139
Query 38626 CTATCGTA 38633
|| || ||
Sbjct 43140 CTGTCATA 43147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468498310779120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |