Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 174 2e-38
seq3919 111 2e-19
>seq4498
Length=49303
Score = 174 bits (192), Expect = 2e-38
Identities = 240/335 (72%), Gaps = 3/335 (1%)
Strand=Plus/Plus
Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640
|||| || |||||||||||| ||||||| |||||||||| ||||| ||||| || || |
Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844
Query 65641 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 65700
|||| |||||||| || || || | | | | |||| || ||||| ||||| ||
Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904
Query 65701 AATCAAATCGCTCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAA 65757
|||| || || || | ||||||||||| | |||| ||||| ||||||||||
Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964
Query 65758 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 65817
| || || || | || | ||||| ||| || ||||||||||||||||| || ||||
Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024
Query 65818 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 65877
| || || | || |||||||| || || || ||| || || || ||| |||
Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTATG 42084
Query 65878 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 65912
| || |||||||||| |||||| | || || |||
Sbjct 42085 GTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119
Score = 116 bits (128), Expect = 5e-21
Identities = 189/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 65088 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 65147
|||| || ||| || || |||||| ||||| || | |||| ||||| | | |
Sbjct 41112 TGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTA 41171
Query 65148 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 65207
| || | | || | || | ||| ||||| |||| ||||||||||||||| || ||||
Sbjct 41172 GCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGG 41231
Query 65208 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 65267
|| || |||| || |||||||| | ||| | || ||||| || || | |||||| ||
Sbjct 41232 CGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCT 41291
Query 65268 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 65327
|| |||||||||||||| || || | | || ||| | | |||| | | ||
Sbjct 41292 GTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATC 41351
Query 65328 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359
||| |||| |||| | |||| | |||||||||
Sbjct 41352 TTAGCTTTCAGAGCTGCCCAGTCCCAAAGATC 41383
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 65968 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 66027
|||| ||||| ||| || || || |||||||||| |||||||||||||||| | |
Sbjct 42262 GTGTGTACAAAGCTTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCGTGAG 42321
Query 66028 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087
||||||| | ||| || | ||| || ||||||||||| | |||||||||||
Sbjct 42322 GACACATGAGGCTCCAAACTTGTTTTTCCAAAACACGTTTCATAAACAAATCAGGAATCC 42381
Query 66088 AAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133
|||| || ||| | ||||| | || ||||| || |||||
Sbjct 42382 AAAGGGCGTAAAACATTTCTCTAGCTCGCATCTCCTCTTTGCCTGT 42427
>seq3919
Length=163912
Score = 111 bits (122), Expect = 2e-19
Identities = 102/129 (79%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701
|||| |||| ||| |||||||| |||||||||||||| || ||||||||||||||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 36702 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTTTTGCAAGGA 36761
|||| ||||| | ||||||| || || || || ||||| | |||| | | ||| |
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683
Query 36762 TTGGTTCCA 36770
||||||||
Sbjct 143684 GTGGTTCCA 143692
Score = 95.1 bits (104), Expect = 2e-14
Identities = 155/223 (70%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
||||||| || ||| | |||||| || || || || ||||| | ||||||||||
Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| |||||||| || || |||| ||||| || ||||| ||||| |||||||
Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332
Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTC---ATGTATCCACTTTTGAGCCCAATCGG 36356
||| | || ||| || | |||||||| | |||||| || | ||||| | |
Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392
Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399
||||||| ||||| || | | || || ||||| || ||
Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACAG 142435
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913
||| || ||| |||||||||||| || || || ||||| |||||||| ||||||||
Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522
Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATT 35946
|| ||||| ||||||||||||||||| |||||
Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658135588555320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |