Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4498 174 2e-38 seq3919 111 2e-19 >seq4498 Length=49303 Score = 174 bits (192), Expect = 2e-38 Identities = 240/335 (72%), Gaps = 3/335 (1%) Strand=Plus/Plus Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 |||| || |||||||||||| ||||||| |||||||||| ||||| ||||| || || | Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844 Query 65641 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 65700 |||| |||||||| || || || | | | | |||| || ||||| ||||| || Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904 Query 65701 AATCAAATCGCTCATC---TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAA 65757 |||| || || || | ||||||||||| | |||| ||||| |||||||||| Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964 Query 65758 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 65817 | || || || | || | ||||| ||| || ||||||||||||||||| || |||| Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024 Query 65818 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 65877 | || || | || |||||||| || || || ||| || || || ||| ||| Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTATG 42084 Query 65878 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 65912 | || |||||||||| |||||| | || || ||| Sbjct 42085 GTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119 Score = 116 bits (128), Expect = 5e-21 Identities = 189/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 65088 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 65147 |||| || ||| || || |||||| ||||| || | |||| ||||| | | | Sbjct 41112 TGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTA 41171 Query 65148 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 65207 | || | | || | || | ||| ||||| |||| ||||||||||||||| || |||| Sbjct 41172 GCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGG 41231 Query 65208 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 65267 || || |||| || |||||||| | ||| | || ||||| || || | |||||| || Sbjct 41232 CGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCT 41291 Query 65268 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATT 65327 || |||||||||||||| || || | | || ||| | | |||| | | || Sbjct 41292 GTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATC 41351 Query 65328 TTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359 ||| |||| |||| | |||| | ||||||||| Sbjct 41352 TTAGCTTTCAGAGCTGCCCAGTCCCAAAGATC 41383 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 65968 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 66027 |||| ||||| ||| || || || |||||||||| |||||||||||||||| | | Sbjct 42262 GTGTGTACAAAGCTTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCGTGAG 42321 Query 66028 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 ||||||| | ||| || | ||| || ||||||||||| | ||||||||||| Sbjct 42322 GACACATGAGGCTCCAAACTTGTTTTTCCAAAACACGTTTCATAAACAAATCAGGAATCC 42381 Query 66088 AAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133 |||| || ||| | ||||| | || ||||| || ||||| Sbjct 42382 AAAGGGCGTAAAACATTTCTCTAGCTCGCATCTCCTCTTTGCCTGT 42427 >seq3919 Length=163912 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 |||| |||| ||| |||||||| |||||||||||||| || ||||||||||||||||| | Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623 Query 36702 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTTTTGCAAGGA 36761 |||| ||||| | ||||||| || || || || ||||| | |||| | | ||| | Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATTATCTCTAAGCA 143683 Query 36762 TTGGTTCCA 36770 |||||||| Sbjct 143684 GTGGTTCCA 143692 Score = 95.1 bits (104), Expect = 2e-14 Identities = 155/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||| || ||| | |||||| || || || || ||||| | |||||||||| Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| |||||||| || || |||| ||||| || ||||| ||||| ||||||| Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTGTC---ATGTATCCACTTTTGAGCCCAATCGG 36356 ||| | || ||| || | |||||||| | |||||| || | ||||| | | Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 ||||||| ||||| || | | || || ||||| || || Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACAG 142435 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||| || ||| |||||||||||| || || || ||||| |||||||| |||||||| Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATT 35946 || ||||| ||||||||||||||||| ||||| Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658135588555320