Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 102 8e-17
seq4480 91.5 1e-13
seq2212 91.5 1e-13
seq4498 82.4 8e-11
>seq3846
Length=171336
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|| || || ||||||||||| || || || || | || | ||||| ||||| || ||
Sbjct 15458 GTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCA-TCTTCAAGCTGCTTTCC 15516
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
|||| |||| || || || || || || || |||||||||||||| ||||||| |||
Sbjct 15517 AGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTTGCTTT 15576
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
|| | || | |||||||| || ||| || || | ||| | || ||||| || | ||
Sbjct 15577 TACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGTTTTGCCAGTAAGAGT 15636
Query 139747 TTTTACGAATATTTGCAT 139764
|| || || ||||||||
Sbjct 15637 CTTCACAAAAATTTGCAT 15654
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| |||||||| || |||||||| || || | || | | ||||| ||||||
Sbjct 14996 TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTCCAGCTGT 15055
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || || | || | | ||||| || ||||| || ||||||||||| ||||||
Sbjct 15056 TTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTG 15115
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|| | | ||| | |||||| | | ||| ||||| | ||| | || |||||||||
Sbjct 15116 GCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTTGCCGGTC 15175
Query 139742 AACGTTTTTACGAATATTTGCATA 139765
|| ||||| || || || ||||||
Sbjct 15176 AAGGTTTTGACAAAGATCTGCATA 15199
Score = 93.3 bits (102), Expect = 4e-14
Identities = 151/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614
|||||| || | || || ||||||||||| || || || || || | ||||||
Sbjct 16129 AACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTC 16188
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
||||| || || || | |||| ||| |||||||| ||||| || || |||||||| |
Sbjct 16189 AAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTC-TT 16247
Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733
|| | |||| |||| | ||| | ||||||| || ||| || || | || | || |
Sbjct 16248 GAATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTT 16307
Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768
|||| || | || || || || ||||||||| ||
Sbjct 16308 TGCCAGTTAGGGTCTTGACAAAGATTTGCATACCT 16342
Score = 89.7 bits (98), Expect = 5e-13
Identities = 144/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| ||||| || || || |||||||||||| | |||| || |||||||||
Sbjct 16592 TGAAGAGTAGATTCCTTCTGGATGTTATAATCGGAAAGAGTGCGGCCATCCTCGAGCTGT 16651
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || ||| |||| | | ||||| || || || || || |||||||| ||| |||
Sbjct 16652 TTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGGATCTTT 16711
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
||| | | ||| | ||||| | | ||| || |||| ||| | || ||||| ||
Sbjct 16712 GCTTTCACATTTTCAATCGTGTCAGAAGCCTCAACTTCAAGGGTGATGGTTTTGCCAGTT 16771
Query 139742 AACGTTTTTACGAATATTTGCATAGCT 139768
|| || || ||||| || |||||| ||
Sbjct 16772 AAGGTCTTCACGAAGATCTGCATACCT 16798
>seq4480
Length=409792
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| ||||| ||||| || ||| |||| || || ||||| || ||||| || || ||||||
Sbjct 402828 TCCTCGAGTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTG 402769
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| |||||| || | | ||| | || |||| | ||||||||||| || |
Sbjct 402768 TCCTGGATTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGATG 402709
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| |||| || |||||||| || |||||
Sbjct 402708 GTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 402674
>seq2212
Length=252600
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| ||||| ||||| || ||| |||| || || ||||| || ||||| || || ||||||
Sbjct 250324 TCCTCGAGTTGTTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTG 250383
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| |||||| || | | ||| | || |||| | ||||||||||| || |
Sbjct 250384 TCCTGGATTTTAGCCTTGACATTTTCGATGGTATCGGACGCCTCCACCTCAAGAGTGATG 250443
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| |||| || |||||||| || |||||
Sbjct 250444 GTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 250478
>seq4498
Length=49303
Score = 82.4 bits (90), Expect = 8e-11
Identities = 118/164 (72%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684
|||| || |||||||| || | || ||||| ||| ||| || ||| |||||| ||
Sbjct 41935 TGTTAACAGCAATCGATGCTAGATTACAAACAGCAACTTCTTCAGGGCTTGAATATTCTA 41994
Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACT-TTGATTGCTTTTG 153743
||||| | || | ||| |||||||| || ||| || | || |||||| ||||
Sbjct 41995 TAATTTCAGTGCAAAGATTACTGCATTTGATTGTGCC-CACGTTCTGTTGATTTGATTTG 42053
Query 153744 CGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787
|| || || || ||||| ||||||||||||||||| |||||
Sbjct 42054 CGATTGCAGTGATCTTTGTACAGCATGTATGGTGTGCCAGTTTC 42097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496035953781600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |