Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 156 6e-33
seq3919 113 6e-20
>seq4498
Length=49303
Score = 156 bits (172), Expect = 6e-33
Identities = 237/336 (71%), Gaps = 5/336 (1%)
Strand=Plus/Plus
Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519
|||| || |||||||||||| ||||||| |||||||||| ||||| ||||| || || |
Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844
Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 79579
|||| |||||||| || || || | ||| | |||| || ||||| ||||| ||
Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904
Query 79580 AATCAAATCGTC----CATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAA 79635
|||| || ||| | | ||||||||||| | || | ||||| |||||||||
Sbjct 41905 AATCGTAT-GTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAA 41963
Query 79636 ACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTA 79695
|| || || || | || | ||||| ||| ||||||||||| || ||||| || ||
Sbjct 41964 ACAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTG 42023
Query 79696 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAC 79755
|| || || | || |||||||| || || || ||| || || || ||| |
Sbjct 42024 ATTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTAT 42083
Query 79756 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 79791
|| || |||||||||| |||||| | || || |||
Sbjct 42084 GGTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119
Score = 127 bits (140), Expect = 3e-24
Identities = 215/309 (70%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026
|||| || ||| || || |||||| ||||| || | ||||| ||||| | | |
Sbjct 41112 TGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTA 41171
Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086
| || | | || | || | ||| ||||| |||| ||||||||||||||| || ||||
Sbjct 41172 GCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGG 41231
Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146
|| || |||| || |||||||| | ||| | |||||||| || || | |||||| ||
Sbjct 41232 CGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCT 41291
Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGT-ATGATCTGAT 79205
|| ||||| || ||||| || || | | || ||| | | |||| | | || ||
Sbjct 41292 GTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCT-AT 41350
Query 79206 TTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATA 79265
||| |||| |||| | |||| ||||||||||| | || |||||||| | |||||
Sbjct 41351 CTTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATA 41410
Query 79266 TTGTAGAAT 79274
|| | |||
Sbjct 41411 CTGCAAAAT 41419
Score = 95.1 bits (104), Expect = 2e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 79843 TATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCG 79902
|| ||||| || || ||| || || || ||||||||||| | |||||||||||||||
Sbjct 42258 TACTGTGTGTACAAAGCTTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCG 42317
Query 79903 TCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGA 79962
| ||||||||| | ||| || | ||| || ||||||||||| | |||||||
Sbjct 42318 TGAGGACACATGAGGCTCCAAACTTGTTTTTCCAAAACACGTTTCATAAACAAATCAGGA 42377
Query 79963 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012
|||||||| || ||| | ||||| | || |||||| || |||||
Sbjct 42378 ATCCAAAGGGCGTAAAACATTTCTCTAGCTCGCATCTCCTCTTTGCCTGT 42427
>seq3919
Length=163912
Score = 113 bits (124), Expect = 6e-20
Identities = 159/223 (71%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
||||||| || ||| || |||||| || || || || ||||| | ||||||||||
Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| |||||||| || || ||| |||||||| ||||| ||||| |||||||
Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332
Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 50158
|||| | || ||| || | | || ||||| | |||||| || | ||||| | |
Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392
Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201
||||||| ||||| || | |||| |||||||| || ||
Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACAG 142435
Score = 111 bits (122), Expect = 2e-19
Identities = 90/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503
|||| |||| |||||||||||| |||||||||||||| || ||||||||||||||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552
|||| ||||| | |||| || ||||| || || ||||| | |||||
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATT 143672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718228190877720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |