Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4498 156 6e-33 seq3919 113 6e-20 >seq4498 Length=49303 Score = 156 bits (172), Expect = 6e-33 Identities = 237/336 (71%), Gaps = 5/336 (1%) Strand=Plus/Plus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| || |||||||||||| ||||||| |||||||||| ||||| ||||| || || | Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844 Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 79579 |||| |||||||| || || || | ||| | |||| || ||||| ||||| || Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904 Query 79580 AATCAAATCGTC----CATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAA 79635 |||| || ||| | | ||||||||||| | || | ||||| ||||||||| Sbjct 41905 AATCGTAT-GTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAA 41963 Query 79636 ACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTA 79695 || || || || | || | ||||| ||| ||||||||||| || ||||| || || Sbjct 41964 ACAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTG 42023 Query 79696 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAC 79755 || || || | || |||||||| || || || ||| || || || ||| | Sbjct 42024 ATTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTAT 42083 Query 79756 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 79791 || || |||||||||| |||||| | || || ||| Sbjct 42084 GGTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119 Score = 127 bits (140), Expect = 3e-24 Identities = 215/309 (70%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026 |||| || ||| || || |||||| ||||| || | ||||| ||||| | | | Sbjct 41112 TGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTA 41171 Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086 | || | | || | || | ||| ||||| |||| ||||||||||||||| || |||| Sbjct 41172 GCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGG 41231 Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146 || || |||| || |||||||| | ||| | |||||||| || || | |||||| || Sbjct 41232 CGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCT 41291 Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGT-ATGATCTGAT 79205 || ||||| || ||||| || || | | || ||| | | |||| | | || || Sbjct 41292 GTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCT-AT 41350 Query 79206 TTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATA 79265 ||| |||| |||| | |||| ||||||||||| | || |||||||| | ||||| Sbjct 41351 CTTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGTGTGACATTCCACATGTCATA 41410 Query 79266 TTGTAGAAT 79274 || | ||| Sbjct 41411 CTGCAAAAT 41419 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 79843 TATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCG 79902 || ||||| || || ||| || || || ||||||||||| | ||||||||||||||| Sbjct 42258 TACTGTGTGTACAAAGCTTCAAATTCATCACCCCAAACATCCGCCAATCCAGGACATTCG 42317 Query 79903 TCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGA 79962 | ||||||||| | ||| || | ||| || ||||||||||| | ||||||| Sbjct 42318 TGAGGACACATGAGGCTCCAAACTTGTTTTTCCAAAACACGTTTCATAAACAAATCAGGA 42377 Query 79963 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 |||||||| || ||| | ||||| | || |||||| || ||||| Sbjct 42378 ATCCAAAGGGCGTAAAACATTTCTCTAGCTCGCATCTCCTCTTTGCCTGT 42427 >seq3919 Length=163912 Score = 113 bits (124), Expect = 6e-20 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||| || ||| || |||||| || || || || ||||| | |||||||||| Sbjct 142213 CCTCGTCCCTGGAAATGAGCTCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTT 142272 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| |||||||| || || ||| |||||||| ||||| ||||| ||||||| Sbjct 142273 TGAGCCAGAATATGGAGGCGAAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGG 142332 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 50158 |||| | || ||| || | | || ||||| | |||||| || | ||||| | | Sbjct 142333 CAACGACTCGCTCACCGAAGTTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTG 142392 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 ||||||| ||||| || | |||| |||||||| || || Sbjct 142393 CCTTCTTAGCGACACAGGGAAGGTTTTCAATGGCATTGAACAG 142435 Score = 111 bits (122), Expect = 2e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 |||| |||| |||||||||||| |||||||||||||| || ||||||||||||||||| | Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 |||| ||||| | |||| || ||||| || || ||||| | ||||| Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATT 143672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718228190877720