Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4498 170 3e-37 seq3919 111 2e-19 >seq4498 Length=49303 Score = 170 bits (188), Expect = 3e-37 Identities = 239/335 (71%), Gaps = 3/335 (1%) Strand=Plus/Plus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| || ||||| |||||| ||||||| |||||||||| ||||| ||||| || || | Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662 |||| |||||||| || || || | ||| | |||| || ||||| ||||| || Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904 Query 71663 AATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAA 71719 |||| || || || | ||||||| ||| | |||| ||||| |||||||||| Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964 Query 71720 CGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGA 71779 | || || || | || | ||||| |||||||||||||||||||||||| || |||| Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024 Query 71780 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACG 71839 | || || | || |||||||| || || || ||| || || || || | | Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTATG 42084 Query 71840 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 | || |||||||||| |||||| | || || ||| Sbjct 42085 GTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119 Score = 129 bits (142), Expect = 8e-25 Identities = 196/279 (70%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 71050 TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTC 71109 |||| || ||| || ||||||||| || || || | ||||| ||||| | | | Sbjct 41112 TGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTA 41171 Query 71110 TCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTA 71169 | || | | || | || | ||| ||||| |||| ||||||||||||||| || |||| Sbjct 41172 GCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGG 41231 Query 71170 CGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCA 71229 || || |||| || |||||||| | ||| | ||| ||||| || || | |||||| || Sbjct 41232 CGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCT 41291 Query 71230 GTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATT 71289 || |||||||||||||| || || | | ||| ||| | | || ||| || Sbjct 41292 GTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATC 41351 Query 71290 TTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGT 71328 ||| |||| |||| | |||| | ||||||||| | |||| Sbjct 41352 TTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGT 41390 >seq3919 Length=163912 Score = 111 bits (122), Expect = 2e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 |||| |||| |||||||||||| || ||||||||||| |||||||||||||||||||| | Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 |||| || || | ||||||| ||||| || || ||||| | ||||| Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATT 143672 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 |||||| || || || || ||||| | ||||||||||| ||||| ||||| || || Sbjct 142233 TCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTTTGAGCCAGAATATGGAGGCG 142292 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 42226 || |||| |||||||| ||||| ||||| |||||||||| | || ||| || | Sbjct 142293 AAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGGCAACGACTCGCTCACCGAAG 142352 Query 42227 CCGGCACTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 42283 |||||||| | |||||| || | ||||| | |||||||| ||||| || Sbjct 142353 TTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTGCCTTCTTAGCGACACAGGGA 142412 Query 42284 ATCGTTTCTATGGCATTAAAGAG 42306 | |||| |||||||| || || Sbjct 142413 AGGTTTTCAATGGCATTGAACAG 142435 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| || ||| |||||||||||| || || || ||||| ||||||||||| ||||| Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATT 41853 | ||||| |||||||||||||| |||||||| Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671101255467480