Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 170 3e-37
seq3919 111 2e-19
>seq4498
Length=49303
Score = 170 bits (188), Expect = 3e-37
Identities = 239/335 (71%), Gaps = 3/335 (1%)
Strand=Plus/Plus
Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602
|||| || ||||| |||||| ||||||| |||||||||| ||||| ||||| || || |
Sbjct 41785 TACCAATTGGTCTATGTCTCATATTAGATTTTTCAGCTTCAGGAATCGGATAGTAGTTGA 41844
Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662
|||| |||||||| || || || | ||| | |||| || ||||| ||||| ||
Sbjct 41845 TATCAATAATTTTGTTCAGGTTGTAGGCTACGATTTTGGTAACTTCCTTGAGTTTTTTAA 41904
Query 71663 AATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAA 71719
|||| || || || | ||||||| ||| | |||| ||||| ||||||||||
Sbjct 41905 AATCGTATGTCTTTTCCGGGGTAACAAACATGTTAACAGCAATCGATGCTAGATTACAAA 41964
Query 71720 CGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGA 71779
| || || || | || | ||||| |||||||||||||||||||||||| || ||||
Sbjct 41965 CAGCAACTTCTTCAGGGCTTGAATATTCTATAATTTCAGTGCAAAGATTACTGCATTTGA 42024
Query 71780 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACG 71839
| || || | || |||||||| || || || ||| || || || || | |
Sbjct 42025 TTGTGCCCACGTTCTGTTGATTTGATTTGCGATTGCAGTGATCTTTGTACAGCATGTATG 42084
Query 71840 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874
| || |||||||||| |||||| | || || |||
Sbjct 42085 GTGTGCCAGTTTCAACCTGAGAGTTCATGATAGCT 42119
Score = 129 bits (142), Expect = 8e-25
Identities = 196/279 (70%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 71050 TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTC 71109
|||| || ||| || ||||||||| || || || | ||||| ||||| | | |
Sbjct 41112 TGAACAGAACCATTATTGGCAATAATCTCGTTCTTCATATTTTCATCCCATAGATCTTTA 41171
Query 71110 TCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTA 71169
| || | | || | || | ||| ||||| |||| ||||||||||||||| || ||||
Sbjct 41172 GCAGTAAGATCTGTTAGTAAATGGGGATTGACTATTTGAAATTCTCCAGATAAGACTCGG 41231
Query 71170 CGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCA 71229
|| || |||| || |||||||| | ||| | ||| ||||| || || | |||||| ||
Sbjct 41232 CGTGTATAAACGTTGCTGGTATAAGCTTCGATTGATTCATTGTTCCCGAGAATTTGTGCT 41291
Query 71230 GTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATT 71289
|| |||||||||||||| || || | | ||| ||| | | || ||| ||
Sbjct 41292 GTGGATGCAGTCGGCATTGGGGCTATGAGTAGCGAATTCCGTACGCCGTGTTTAGCTATC 41351
Query 71290 TTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGT 71328
||| |||| |||| | |||| | ||||||||| | ||||
Sbjct 41352 TTAGCTTTCAGAGCTGCCCAGTCCCAAAGATCTGTTGGT 41390
>seq3919
Length=163912
Score = 111 bits (122), Expect = 2e-19
Identities = 90/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608
|||| |||| |||||||||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 143564 CTTTGGATAAATCTACTTCTTCGACTGTCCAAAATGAGGCTTCTGCCTTTTTATACATTT 143623
Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657
|||| || || | ||||||| ||||| || || ||||| | |||||
Sbjct 143624 TCCAAATGTCCGGCCATTGAATCGGGAATATGACGAATCTCTGAGGATT 143672
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/203 (71%), Gaps = 3/203 (1%)
Strand=Plus/Plus
Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166
|||||| || || || || ||||| | ||||||||||| ||||| ||||| || ||
Sbjct 142233 TCGTTGCTGAAGGTCAGACCTGGCATCAATCCACGCTTTTTGAGCCAGAATATGGAGGCG 142292
Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 42226
|| |||| |||||||| ||||| ||||| |||||||||| | || ||| || |
Sbjct 142293 AAACTTCCACTGAAGAAGATCCCTTCGACTGCTGCAAAGGCAACGACTCGCTCACCGAAG 142352
Query 42227 CCGGCACTGTC---ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 42283
|||||||| | |||||| || | ||||| | |||||||| ||||| ||
Sbjct 142353 TTTGCACTGTCGTTGTTTATCCAGTTCAGCGCCCAGTTTGCCTTCTTAGCGACACAGGGA 142412
Query 42284 ATCGTTTCTATGGCATTAAAGAG 42306
| |||| |||||||| || ||
Sbjct 142413 AGGTTTTCAATGGCATTGAACAG 142435
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820
||| || ||| |||||||||||| || || || ||||| ||||||||||| |||||
Sbjct 141463 CATCACGCCCCATTTTTGGTATTCTCCGACCTTCTTCTCGAAGAAATTAGTCTTACCTTC 141522
Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATT 41853
| ||||| |||||||||||||| ||||||||
Sbjct 141523 TAGCGATATGTTTTCCATGAAATCGAACGGATT 141555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671101255467480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |