Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3846 107 2e-18 seq4498 82.4 8e-11 >seq3846 Length=171336 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||| || | |||| |||||||||||||| ||| Sbjct 15686 GTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGTTTTCCA 15745 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| ||| ||||| || ||||| || || |||||||| |||||| || Sbjct 15746 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTAGCCTTC 15805 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||||| | || || || | ||| | ||||| || || |||||| Sbjct 15806 ACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTTAATGTT 15865 Query 143168 TTTACGAATATTTGCAT 143184 || || || |||||||| Sbjct 15866 TTGACAAAAATTTGCAT 15882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| || | ||| || |||| ||||||||||| || || ||||| || Sbjct 15884 CCACCACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGAT 15943 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| || || || |||||| |||||| ||| ||||| || ||||| Sbjct 15944 AAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 16003 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| |||| | ||| | ||||| | || || ||| Sbjct 16004 ATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACT 16063 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| || | || || ||||| |||||||| Sbjct 16064 TCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||| | || ||||||||||| || ||||| || || || | |||||| Sbjct 16129 AACTAAATGTAAGGTGGATTCTTTTTGAATATTGTAGTCCGACAAAGTACGTCCGTCTTC 16188 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || || || || || | |||| ||| |||||||| ||||| || || |||||||| Sbjct 16189 AAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG 16248 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| ||| |||| | ||| | ||||| | || || ||||| | || | || || Sbjct 16249 AATCTTTGCCTTTACATTTTCAATAGTGTCGGAGGCCTCGACTTCCAACGTGATGGTTTT 16308 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| || | || || || || ||||||||| || Sbjct 16309 GCCAGTTAGGGTCTTGACAAAGATTTGCATACCT 16342 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTC 143031 ||||| | ||| | || ||||| ||||| |||||||| || || || | || | || Sbjct 15443 AAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCA-TC 15501 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| || || || |||||| |||| || || || || || || || |||||||||||||| Sbjct 15502 TTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTGTC 15561 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 |||||| ||||| | || | ||||| | || || ||||| | || | || Sbjct 15562 TTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAATGGT 15621 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | || || || || |||||||| Sbjct 15622 TTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | ||||| || |||||||| || ||||||||||| Sbjct 16340 CCTCCACGGAGACGAAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGAA 16399 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || || ||||| || ||| |||||| | ||||| || || || Sbjct 16400 AGCGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGG 16459 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| || | | ||| | ||||||| | |||||| Sbjct 16460 ATTCCCTCCTTGTCTTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTACT 16519 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| || | || ||||| || || || || ||||| || |||||| || Sbjct 16520 TCAAGGGTAATAGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCATACCT 16570 >seq4498 Length=49303 Score = 82.4 bits (90), Expect = 8e-11 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 157049 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTC-GGGCGCGCAATATTGTAC 157107 || || |||||||| ||||||||||| || ||| ||| || |||| | |||||| || Sbjct 41937 TTAACAGCAATCGATGCTAGATTACAAACAGCAACTTCTTCAGGGCTTG-AATATTCTAT 41995 Query 157108 TATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTTGC 157166 ||||| | || | ||| |||||||| || | | || | || |||||| ||||| Sbjct 41996 AATTTCAGTGCAAAGATTACTGCATTTGAT-TGTGCCCACGTTCTGTTGATTTGATTTGC 42054 Query 157167 GGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 157209 | ||||| || ||||| | |||||| |||||||| ||||| Sbjct 42055 GATTGCAGTGATCTTTGTACAGCATGTATGGTGTGCCAGTTTC 42097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506985734673360