Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3112 107 3e-18 seq1458 96.9 5e-15 seq3919 91.5 2e-13 >seq3112 Length=543522 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 70202 GATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCA 70261 || ||| | ||| ||||||| | |||||||| | ||| | | |||||| ||||| Sbjct 484408 GACAGGCGAATCATAATGTGTGCCTGGAATCCAGTGGATATCCCAATAATGGCTTTACCA 484349 Query 70262 CCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTAT 70321 || || || ||| ||| |||||| ||| || ||||| |||| || || ||| |||| Sbjct 484348 CCTTGCCATTGTCTGGTTCAGTTGTACGTGTCTAATGGCGAATTATCGTGTTTATTGTAC 484289 Query 70322 CAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCT 70375 ||| |||| | || ||||| || ||| | |||||||||||||| || |||||| Sbjct 484288 CAGCGGAGCGGGGATATGGGTCTGGGTATTCCCTTTAACATTGCCAGTTATTCT 484235 >seq1458 Length=295496 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 || || || || || ||||||||||| ||||| || ||||| || | || || |||| | Sbjct 62200 CCATGTGTTAGATGCCCTCCGTCGGGGAGATCTAGACCCATTATACGCCCATGGGGTTCA 62141 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 || | |||||||| || ||||| |||||| ||| ||||||||||| ||| | Sbjct 62140 ACCAGACCAGTGTAGACAGCAAAATTGGCCGGACTGCCGGAGTACGGTTGAACATTGCAT 62081 Query 127567 CCCCATTCGGACTCG-TTCAAATTGAACGC-TCTGAGACATCGCTGCTGTGCTAGCAGTT 127624 |||||||| || | || | |||| | || ||| || || || | || || || | || Sbjct 62080 CCCCATTC-TTCTGGATTTAGATTGTAAGCTTCTAAGGCA-CGTTTTTGAGCAAGTAATT 62023 Query 127625 CGATGCGATCGATAAACTCGTTACCACCATAGTATC 127660 | || |||| || || ||||| ||||| || |||| Sbjct 62022 CAATTTGATCAATGAATTCGTTTCCACCGTAATATC 61987 >seq3919 Length=163912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 125779 AGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGA 125838 |||| |||||| || ||||||| || ||||||||| | |||||| ||||| ||||||| Sbjct 141572 AGATATACAACTCCGAGAATCCGTTCGATTTCATGGAAAACATATCGCTAGAAGGTAAGA 141513 Query 125839 CCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAA 125873 | || || ||||||||||||||| | || ||| || Sbjct 141512 CTAATTTCTTCGAGAAGAAGGTCGGAGAATACCAA 141478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741017302365480