Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3846 105 5e-18 >seq3846 Length=171336 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||||| |||||||||||| || ||||| || || || ||| ||| | | | | ||||| Sbjct 15217 AACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTC 15276 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-AC 15272 | ||||| ||||| | || || | || ||||| ||| ||||| || ||||| Sbjct 15277 CAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 15336 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || ||||||| || || | ||||| ||||| || || || || ||||| || | Sbjct 15337 AATTTTTGCT-TTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCT 15395 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || |||||||| ||||||||||||||| Sbjct 15396 TTCCAGTAAGAGTTTTGACAAAAATTTGCATA 15427 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| |||||||| |||||||| || ||| | | | ||||| | |||| Sbjct 15680 TGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGT 15739 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||| || ||||| |||||||| |||||||| |||||| Sbjct 15740 TTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTA 15799 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || || | || || || || || || || || || || Sbjct 15800 GCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTT 15859 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||||| |||||||||||||| Sbjct 15860 AATGTTTTGACAAAAATTTGCAT 15882 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 |||||||| | ||| | ||| || || ||||| |||||||| || | ||| | Sbjct 15440 CTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCA 15499 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | || || ||||| | || | || |||||||| |||||| ||||||||| Sbjct 15500 TCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTG 15559 Query 15269 TC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || | ||||||| ||||| | || || || ||| || || || |||||||| Sbjct 15560 TCTTGGATTTTTGCT-TTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAAT 15618 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || ||||| || |||||||||||||| Sbjct 15619 GGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| || || ||||| || || ||||| || || | | ||||||| Sbjct 15901 AACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTC 15960 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || |||||||| | |||||||| || ||||| |||||||| || ||||| Sbjct 15961 AAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTG 16020 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||||||| |||| || || ||| || || || || || |||||||| Sbjct 16021 AATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTT 16080 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || ||||||||||| Sbjct 16081 GCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || || || |||||||| || || | | | | ||||| Sbjct 14989 AACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTC 15048 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| || ||| |||| || | || ||||| ||||||||||||||||| Sbjct 15049 CAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTG 15108 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| ||| |||| || || || || || || ||||| || ||||| Sbjct 15109 GATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTT 15168 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||||| ||||| || |||||| Sbjct 15169 GCCGGTCAAGGTTTTGACAAAGATCTGCATA 15199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362159235211143