Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 105 5e-18
>seq3846
Length=171336
Score = 105 bits (116), Expect = 5e-18
Identities = 152/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||||| |||||||||||| || ||||| || || || ||| ||| | | | | |||||
Sbjct 15217 AACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGAAAGAGTACGCCCATCTTC 15276
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-AC 15272
| ||||| ||||| | || || | || ||||| ||| ||||| || |||||
Sbjct 15277 CAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 15336
Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
|| ||||||| || || | ||||| ||||| || || || || ||||| || |
Sbjct 15337 AATTTTTGCT-TTCACGTTCTCTATTGTATCAGATGCCTCGACTTCCAAAGTAATTGTCT 15395
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
| || || |||||||| |||||||||||||||
Sbjct 15396 TTCCAGTAAGAGTTTTGACAAAAATTTGCATA 15427
Score = 105 bits (116), Expect = 5e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| |||||||| |||||||| |||||||| || ||| | | | ||||| | ||||
Sbjct 15680 TGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCTTCGAGTTGT 15739
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||||||| || ||||| |||||||| |||||||| ||||||
Sbjct 15740 TTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCTTTGTCCTGAATTTTA 15799
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| ||| | || || || || | || || || || || || || || || ||
Sbjct 15800 GCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACCTCCAAAGTGATTGTCTTTCCAGTT 15859
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
| ||||| ||||||||||||||
Sbjct 15860 AATGTTTTGACAAAAATTTGCAT 15882
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208
|||||||| | ||| | ||| || || ||||| |||||||| || | ||| |
Sbjct 15440 CTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCGTCCA 15499
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| | || || ||||| | || | || |||||||| |||||| |||||||||
Sbjct 15500 TCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTGGAATGCCTTCTTTG 15559
Query 15269 TC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
|| | ||||||| ||||| | || || || ||| || || || ||||||||
Sbjct 15560 TCTTGGATTTTTGCT-TTTACGTTCTCAATTGTGTCGGAGGCCTCGACTTCCAAGGTAAT 15618
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||||| || || ||||| || ||||||||||||||
Sbjct 15619 GGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| || ||||| || || ||||| || || ||||| || || | | |||||||
Sbjct 15901 AACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGATAAGGTCCGTCCGTCTTC 15960
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| || |||||||| | |||||||| || ||||| |||||||| || |||||
Sbjct 15961 AAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCCTCCTTGTCTTG 16020
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|||||| ||||||| |||| || || ||| || || || || || ||||||||
Sbjct 16021 AATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACTTCCAACGTGATGGTTTT 16080
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || || |||||||||||
Sbjct 16081 GCCAGTGAGAGTCTTAACGAAAATTTGCAT 16110
Score = 93.3 bits (102), Expect = 3e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | |||||| || || || || || |||||||| || || | | | | |||||
Sbjct 14989 AACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGGGTACGCCCATCTTC 15048
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| ||||| || ||| |||| || | || ||||| |||||||||||||||||
Sbjct 15049 CAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTG 15108
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|||||| ||| ||| |||| || || || || || || ||||| || |||||
Sbjct 15109 GATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCAACCTCCAAGGTGATAGTTTT 15168
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| |||| ||||| ||||| || ||||||
Sbjct 15169 GCCGGTCAAGGTTTTGACAAAGATCTGCATA 15199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362159235211143
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |